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一种使用伯努利分布随机值生成的分类数据将高质量科学文献数据转换为虚拟患者病例的方法的提议:开发与原型实现

Proposal of a Method for Transferring High-Quality Scientific Literature Data to Virtual Patient Cases Using Categorical Data Generated by Bernoulli-Distributed Random Values: Development and Prototypical Implementation.

作者信息

Schmidt Christian, Kesztyüs Dorothea, Haag Martin, Wilhelm Manfred, Kesztyüs Tibor

机构信息

Medical Data Integration Center, Department of Medical Informatics, University Göttingen, Göttingen, Germany.

GECKO Institute, Heilbronn University of Applied Sciences, Heilbronn, Germany.

出版信息

JMIR Med Educ. 2023 Mar 9;9:e43988. doi: 10.2196/43988.

DOI:10.2196/43988
PMID:36892938
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10037169/
Abstract

BACKGROUND

Teaching medicine is a complex task because medical teachers are also involved in clinical practice and research and the availability of cases with rare diseases is very restricted. Automatic creation of virtual patient cases would be a great benefit, saving time and providing a wider choice of virtual patient cases for student training.

OBJECTIVE

This study explored whether the medical literature provides usable quantifiable information on rare diseases. The study implemented a computerized method that simulates basic clinical patient cases utilizing probabilities of symptom occurrence for a disease.

METHODS

Medical literature was searched for suitable rare diseases and the required information on the respective probabilities of specific symptoms. We developed a statistical script that delivers basic virtual patient cases with random symptom complexes generated by Bernoulli experiments, according to probabilities reported in the literature. The number of runs and thus the number of patient cases generated are arbitrary.

RESULTS

We illustrated the function of our generator with the exemplary diagnosis "brain abscess" with the related symptoms "headache, mental status change, focal neurologic deficit, fever, seizure, nausea and vomiting, nuchal rigidity, and papilledema" and the respective probabilities from the literature. With a growing number of repetitions of the Bernoulli experiment, the relative frequencies of occurrence increasingly converged with the probabilities from the literature. For example, the relative frequency for headache after 10.000 repetitions was 0.7267 and, after rounding, equaled the mean value of the probability range of 0.73 reported in the literature. The same applied to the other symptoms.

CONCLUSIONS

The medical literature provides specific information on characteristics of rare diseases that can be transferred to probabilities. The results of our computerized method suggest that automated creation of virtual patient cases based on these probabilities is possible. With additional information provided in the literature, an extension of the generator can be implemented in further research.

摘要

背景

医学教学是一项复杂的任务,因为医学教师还参与临床实践和研究,且罕见病病例的获取非常有限。自动创建虚拟患者病例将大有裨益,既能节省时间,又能为学生培训提供更多样化的虚拟患者病例选择。

目的

本研究探讨医学文献是否能提供关于罕见病的可用量化信息。该研究实施了一种计算机化方法,利用疾病症状出现的概率来模拟基本临床患者病例。

方法

在医学文献中搜索合适的罕见病以及特定症状各自的概率所需信息。我们开发了一个统计脚本,根据文献中报道的概率,通过伯努利实验生成具有随机症状组合的基本虚拟患者病例。运行次数以及由此生成的患者病例数量是任意的。

结果

我们以“脑脓肿”这一典型诊断为例,展示了我们生成器的功能,其相关症状包括“头痛、精神状态改变、局灶性神经功能缺损、发热、癫痫发作、恶心和呕吐、颈项强直以及视乳头水肿”,并给出了文献中的相应概率。随着伯努利实验重复次数的增加,出现的相对频率越来越接近文献中的概率。例如,在10000次重复后头痛的相对频率为0.7267,四舍五入后等于文献中报道的概率范围的平均值0.73。其他症状也是如此。

结论

医学文献提供了关于罕见病特征的特定信息,这些信息可以转化为概率。我们计算机化方法的结果表明,基于这些概率自动创建虚拟患者病例是可行的。随着文献中提供更多信息,在进一步研究中可以对生成器进行扩展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c218/10037169/bcf60a4dba91/mededu_v9i1e43988_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c218/10037169/26da92eb80cc/mededu_v9i1e43988_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c218/10037169/bcf60a4dba91/mededu_v9i1e43988_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c218/10037169/26da92eb80cc/mededu_v9i1e43988_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c218/10037169/bcf60a4dba91/mededu_v9i1e43988_fig2.jpg

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本文引用的文献

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DOES THE TYPE OF SURGERY IN BRAIN ABSCESS PATIENTS INFLUENCE THE OUTCOME? ANALYSIS BASED ON THE PROPENSITY SCORE METHOD.脑脓肿患者的手术类型是否会影响治疗效果?基于倾向评分方法的分析。
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Emerging Tick-Borne Diseases.新兴蜱传疾病
Clin Microbiol Rev. 2020 Jan 2;33(2). doi: 10.1128/CMR.00083-18. Print 2020 Mar 18.
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The Pursuit of Diagnostic Excellence.追求卓越诊断。
JAMA Netw Open. 2019 Dec 2;2(12):e1918040. doi: 10.1001/jamanetworkopen.2019.18040.
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Brain abscess in immunocompetent adult patients.免疫功能正常成人患者的脑脓肿。
Rev Neurol (Paris). 2019 Sep-Oct;175(7-8):469-474. doi: 10.1016/j.neurol.2019.07.002. Epub 2019 Aug 22.
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Evaluation of Short-Term Neurological Outcomes in Children with Brain Abscesses.脑脓肿患儿短期神经学转归的评估
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