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五种主要欧洲油菜害虫的从头转录组组装。

De novo transcriptome assemblies of five major European oilseed rape insect pests.

机构信息

Division of Crop Plant Genetics, Department of Crop Science, Georg-August-University Goettingen, Goettingen, Germany.

Division of Agricultural Entomology, Department of Crop Science, Georg-August-University Goettingen, Goettingen, Germany.

出版信息

BMC Genom Data. 2023 Mar 10;24(1):15. doi: 10.1186/s12863-023-01115-8.

Abstract

OBJECTIVE

Insect pests can cause severe losses in oilseed rape yields across Europe. Genomic and transcriptomic information is very limited for these insects. The aim of our study was to provide transcriptomic resources on several oilseed rape herbivores that will support research into their biology and help develop new methods of sustainable pest management.

DATA

Transcriptomes for larval stages of five major European pest species were de novo assembled by Trinity assembler. Total number of transcripts ranged from 112,247 for Ceutorhynchus pallidactylus to 225,110 for Ceutorhyncus napi. Intermediate numbers of 140,588, 140,998 and 144,504, were found for Psylliodes chrysocephala, Dasineura brassicae, and Brassicogethes aeneus, respectively. Bench-marking universal single-copy orthologues analyses for each dataset indicated high degree of completeness for all five species. The transcriptomes extend the list of genomic data on insect larvae that constitute major pests of oilseed rape. The data provide information on larval physiology and form a basis to develop highly specific RNA interference-based plant protection.

摘要

目的

昆虫害虫会给整个欧洲的油菜籽产量造成严重损失。这些昆虫的基因组和转录组信息非常有限。本研究旨在为几种油菜籽食草昆虫提供转录组资源,这将有助于研究它们的生物学特性,并有助于开发新的可持续害虫管理方法。

数据

通过 Trinity 组装器对 5 种欧洲主要害虫的幼虫期进行了从头组装。转录本的总数从 Ceutorhynchus pallidactylus 的 112247 个到 Ceutorhyncus napi 的 225110 个不等。Psylliodes chrysocephala、Dasineura brassicae 和 Brassicogethes aeneus 的转录本数量分别为 140588、140998 和 144504。对每个数据集的通用单拷贝直系同源物基准测试分析表明,所有 5 个物种的完整性都很高。这些转录组扩展了构成油菜籽主要害虫的昆虫幼虫的基因组数据列表。这些数据提供了有关幼虫生理学的信息,并为开发高度特异性的 RNA 干扰植物保护奠定了基础。

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RNA-based technologies for insect control in plant production.基于 RNA 的植物生产中昆虫控制技术。
Biotechnol Adv. 2020 Mar-Apr;39:107463. doi: 10.1016/j.biotechadv.2019.107463. Epub 2019 Oct 31.

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