Laboratory of Computational Simulations, Institute of Educational Sciences, Federal University of Western Pará, Santarém, Pará, 68040-255, Brazil.
Laboratory of Molecular Modeling, Institute of Educational Sciences (LabIn02), Federal University of Western Pará, Santarém, Pará, 68040-255, Brazil.
J Mol Model. 2023 Mar 11;29(4):93. doi: 10.1007/s00894-023-05468-w.
Anthocyanidins, leucoanthocyanidins, and flavonols are natural compounds mainly known due to their reported biological activities, such as antiviral, antifungal, anti-inflammatory activities, and antioxidant activity. In the present study, we performed a comparative structural, conformational, electronic, and nuclear magnetic resonance analysis of the reactivity of the chemical structure of primary anthocyanidins, leucoanthocyanidins, and flavonoids. We focused our analysis on the following molecular questions: (i) differences in cyanidin catechols ( +)-catechin, leucocyanidin, and quercetin; (ii) the loss of hydroxyl presents in the R1 radical of leucoanthocyanidin in the functional groups linked to C4 (ring C); and (iii) the electron affinity of the 3-hydroxyl group (R7) in the flavonoids delphinidin, pelargonidin, cyanidin, quercetin, and kaempferol. We show unprecedented results for bond critical point (BCP) of leucopelargonidin and leucodelphirinidin. The BCP formed between hydroxyl hydrogen (R2) and ketone oxygen (R1) of kaempferol has the same degrees of covalence of quercetin. Kaempferol and quercetin exhibited localized electron densities between hydroxyl hydrogen (R2) and ketone oxygen (R1). Global molecular descriptors showed quercetin and leucocyanidin are the most reactive flavonoids in electrophilic reactions. Complementary, anthocyanidins are the most reactive in nucleophilic reactions, while the smallest gap occurs in delphinidin. Local descriptors indicate that anthocyanidins and flavonols are more prone to electrophilic attacks, while in leucoanthocyanidins, the most susceptible to attack are localized in the ring A. The ring C of anthocyanidins is more aromatic than the same found in flavonols and leucoanthocyanidins. METHODS: For the analysis of the molecular properties, we used the DFT to evaluate the formation of the covalent bonds and intermolecular forces. CAM-B3LYP functional with the def2TZV basis set was used for the geometry optimization. A broad analysis of quantum properties was performed using the assessment of the molecular electrostatic potential surface, electron localization function, Fukui functions, descriptors constructed from frontier orbitals, and nucleus independent chemical shift.
花色苷、无色花青素和类黄酮是天然化合物,主要因其报道的生物活性而为人所知,如抗病毒、抗真菌、抗炎活性和抗氧化活性。在本研究中,我们对主要花色苷、无色花青素和类黄酮的化学结构的反应性进行了比较结构、构象、电子和核磁共振分析。我们的分析集中在以下分子问题上:(i)矢车菊素儿茶酸(+)-儿茶素、无色矢车菊素和槲皮素之间的差异;(ii)无色花青素 R1 自由基中存在的羟基在与 C4(环 C)相连的官能团中的丢失;(iii)类黄酮飞燕草素、天竺葵素、矢车菊素、槲皮素和山柰酚中 3-羟基(R7)的电子亲合势。我们为无色天竺葵素和无色飞燕草素的键临界点(BCP)展示了前所未有的结果。山柰酚中羟基氢(R2)和酮氧(R1)之间形成的 BCP 具有与槲皮素相同程度的共价性。山柰酚和槲皮素在羟基氢(R2)和酮氧(R1)之间表现出局部电子密度。全局分子描述符表明,槲皮素和无色矢车菊素是亲电反应中最具反应性的类黄酮。补充说,花色苷在亲核反应中最具反应性,而飞燕草素的差距最小。局部描述符表明,花色苷和黄酮醇更容易受到亲电攻击,而无色花青素中最易受攻击的部位位于环 A。花色苷的环 C 比黄酮醇和无色花青素中的环 C 更具芳香性。方法:为了分析分子性质,我们使用 DFT 来评估共价键和分子间力的形成。使用 CAM-B3LYP 功能和 def2TZV 基组进行几何优化。使用评估分子静电势表面、电子定域函数、福井函数、前沿轨道构建的描述符和核独立化学位移对量子性质进行了广泛分析。