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甜瓜(Cucumis melo L.)基因家族的全基因组鉴定、进化及表达分析

Genome-wide identification, evolution, and expression analysis of gene family in melon ( L.).

作者信息

Zhang Taifeng, Xu Nan, Amanullah Sikandar, Gao Peng

机构信息

Key Laboratory of Biology and Genetic Improvement of Horticulture Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, Harbin, China.

College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China.

出版信息

Front Plant Sci. 2023 Feb 24;14:1144317. doi: 10.3389/fpls.2023.1144317. eCollection 2023.

Abstract

Powdery mildew (PM) is one of the main fungal diseases that appear during the cultivation of the melon fruit crop. Mildew Resistance Locus "O" (MLO) is known as a gene family and has seven conserved transmembrane domains. An induced functional loss of a specific gene could mainly confer PM resistance to melons. However, the genomic structure of genes and its main role in PM resistance still remain unclear in melon. In this study, bioinformatic analysis identified a total of 14 gene family members in the melon genome sequence, and these genes were distributed in an uneven manner on eight chromosomes. The phylogenetic analysis divided the genes into five different clades, and gene structural analysis showed that genes in the same clade had similar intron and exon distribution patterns. In addition, by cloning the gene sequence in four melon lines, analyzing the gene expression pattern after infection, and making microscopic observations of the infection pattern of PM, we concluded that the () gene plays a negative role in regulating PM-resistance in the susceptible melon line (Topmark), and the critical time point for gene function was noticed at 24 and 72 hours after PM infection. The mutational analysis exhibited a single base mutation at 572 bp, which further results in loss of protein function, thus conferring PM resistance in melon. In summary, our research evidence provides a thorough understanding of the gene family and demonstrates their potential role in disease resistance, as well as a theoretical foundation for melon disease resistance breeding.

摘要

白粉病是甜瓜作物种植过程中出现的主要真菌病害之一。抗白粉病基因座“O”(MLO)是一个基因家族,具有七个保守的跨膜结构域。特定基因的功能缺失诱导主要可使甜瓜对白粉病产生抗性。然而,甜瓜中该基因的基因组结构及其在抗白粉病中的主要作用仍不清楚。在本研究中,通过生物信息学分析在甜瓜基因组序列中总共鉴定出14个该基因家族成员,这些基因不均匀地分布在八条染色体上。系统发育分析将这些基因分为五个不同的进化枝,基因结构分析表明同一进化枝中的基因具有相似的内含子和外显子分布模式。此外,通过克隆四个甜瓜品系中的该基因序列,分析感染后该基因的表达模式,并对白粉病的感染模式进行显微镜观察,我们得出结论:MLO()基因在感病甜瓜品系(Topmark)中对调节白粉病抗性起负作用,且在白粉病感染后24小时和72小时注意到该基因功能的关键时间点。突变分析显示在572 bp处有一个单碱基突变,这进一步导致蛋白质功能丧失,从而赋予甜瓜对白粉病的抗性。总之,我们的研究证据提供了对MLO基因家族的全面理解,证明了它们在抗病性中的潜在作用,也为甜瓜抗病育种提供了理论基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e968/9998560/94c29a7a9ace/fpls-14-1144317-g001.jpg

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