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基因在山羊中的表达模式和 DNA 甲基化特征。

Expression patterns and DNA methylation profile of gene in goats.

机构信息

Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, China.

出版信息

Anim Biotechnol. 2023 Dec;34(8):3617-3625. doi: 10.1080/10495398.2023.2184698. Epub 2023 Mar 13.

Abstract

Gene trap locus 2 (), a long non-coding paternal imprinting gene, participates in various biological processes, including cell proliferation, differentiation, and apoptosis, by regulating the transcription of target mRNA, which is tightly related to the growth of the organic and maintenance of function. In this study, DNA methylation patterns of CpG islands (CGI) of were explored, and its expression level was quantified in six tissues, rumen epithelium cells, and skeletal muscle cells in goats. expression levels were measured by quantitative reverse transcriptase polymerase chain reaction (qRT-PCR), and the methylation model was confirmed by bisulfite-sequencing PCR (BSP). CGI methylation of indicated a moderate methylation (ranging from 81.42 to 86.83%) in the brain, heart, liver, kidney, lung, and is most highly expressed in brain tissues, but there is no significant difference in the other five tissues. In addition, in the rumen epithelium cell proliferation, expression was highest at 60 h, followed by 72 h, and almost unchanged at 12-48 h. In the skeletal muscle cell differentiation, expression was highest at 0 and 24 h, significantly decreasing at 72 and 128 h. Pearson correlation analysis did not indicate a clear relationship between methylation and expression levels, suggesting that other regulatory factors may modulate expression. This study will provide a better understanding of the expression regulation mechanism of genes in the delta-like homolog 1 gene ()- domain.

摘要

基因捕获位点 2()是一个长的非编码父系印迹基因,通过调节靶 mRNA 的转录参与各种生物学过程,包括细胞增殖、分化和凋亡,与有机的生长和功能的维持密切相关。在这项研究中,我们探讨了山羊中 的 CpG 岛(CGI)的 DNA 甲基化模式,并在六个组织(瘤胃上皮细胞和骨骼肌细胞)中定量了其表达水平。通过定量逆转录聚合酶链反应(qRT-PCR)测量了 的表达水平,并通过亚硫酸氢盐测序聚合酶链反应(BSP)确认了甲基化模型。 的 CGI 甲基化在大脑、心脏、肝脏、肾脏、肺和中呈中度甲基化(范围为 81.42-86.83%), 在脑组织中表达水平最高,但在其他五个组织中没有显著差异。此外,在瘤胃上皮细胞增殖中, 在 60 h 时表达最高,随后在 72 h 时略有下降,在 12-48 h 时几乎不变。在骨骼肌细胞分化中, 在 0 和 24 h 时表达最高,在 72 和 128 h 时显著下降。Pearson 相关分析表明,甲基化与 表达水平之间没有明显的关系,表明其他调节因子可能调节 的表达。本研究将为进一步了解 delta-like 同源物 1 基因()-结构域中基因的表达调控机制提供更好的理解。

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