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灿烂弧菌持留菌细胞初始复苏的蛋白质组学分析

Proteomic analysis of the initial wake up of vibrio splendidus persister cells.

作者信息

Jiang Guohua, Li Ya, Zhang Jinxia, Li Weisheng, Dang Wei, Zhang Weiwei

机构信息

Key Laboratory of Aquacultral Biotechnology Ministry of Education, Ningbo University, 169 Qixingnan Road, Beilun District, Ningbo, 315832, People's Republic of China.

School of Marine Sciences, Ningbo University, 169 Qixingnan Road, Beilun District, Ningbo, 315832, People's Republic of China.

出版信息

World J Microbiol Biotechnol. 2023 Mar 15;39(5):116. doi: 10.1007/s11274-023-03559-7.

Abstract

Vibrio splendidus is a ubiquitous pathogen that causes various diseases in aquaculture with a wide range of hosts. In our previous studies, we showed that L-glutamic acid was the optimal carbon source that could revive V. splendidus persister cells. In our present study, single cell observation under microscopy showed that V. splendidus could revive using L-glutamic acid as carbon source. A proteomic analysis was carried out to further illustrate the initial wake up of persister cells with L-glutamic acid. To collect the initially revived cells, SDS-PAGE was used to determine the revived time. The total proteins from the persister cells and the revived cells were analyzed using LC‒MS/MS. A total of 106 proteins, including 42 downregulated proteins and 64 upregulated proteins, were identified. GO analysis of the differentially expressed proteins (DEPs) showed that biological processes, including protein complex assembly, protein oligomerization, and arginine metabolism; cellular components, including extracellular membrane, plasma membrane and ribosome; and molecular functions, including the activities of arginine binding and structural constituent of ribosome, were enriched. KEGG analysis showed that lipopolysaccharide biosynthesis, porphyrin and chlorophyll metabolism, and peptidoglycan biosynthesis were upregulated, while the ribosome was downregulated. This is the first time to study the initial wake up of persister cells based on proteomic analysis, and the results revealed the main pathways involved in the early resuscitation of V. splendidus persister cells.

摘要

灿烂弧菌是一种普遍存在的病原体,可在水产养殖中引发多种疾病,宿主范围广泛。在我们之前的研究中,我们表明L-谷氨酸是能够使灿烂弧菌持留菌细胞复苏的最佳碳源。在本研究中,显微镜下的单细胞观察表明,灿烂弧菌可以利用L-谷氨酸作为碳源进行复苏。进行了蛋白质组学分析,以进一步阐明持留菌细胞利用L-谷氨酸的初始苏醒过程。为了收集最初复苏的细胞,使用SDS-PAGE来确定复苏时间。使用LC-MS/MS分析持留菌细胞和复苏细胞的总蛋白。共鉴定出106种蛋白质,包括42种下调蛋白和64种上调蛋白。对差异表达蛋白(DEPs)的GO分析表明,包括蛋白质复合物组装、蛋白质寡聚化和精氨酸代谢在内的生物学过程;包括细胞外膜、质膜和核糖体在内的细胞成分;以及包括精氨酸结合活性和核糖体结构成分在内的分子功能均得到富集。KEGG分析表明,脂多糖生物合成、卟啉和叶绿素代谢以及肽聚糖生物合成上调,而核糖体下调。这是首次基于蛋白质组学分析研究持留菌细胞的初始苏醒,结果揭示了灿烂弧菌持留菌细胞早期复苏所涉及的主要途径。

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