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网络药理学与分子对接的综合应用:一种中药配方通过细胞焦亡改善H9c2细胞损伤。

Integrative applications of network pharmacology and molecular docking: An herbal formula ameliorates H9c2 cells injury through pyroptosis.

作者信息

Qi Zhongwen, Yan Zhipeng, Wang Yueyao, Ji Nan, Yang Xiaoya, Zhang Ao, Li Meng, Xu Fengqin, Zhang Junping

机构信息

Postdoctoral Research Station of China Academy of Chinese Medical Sciences, Institute of Gerontology, Xiyuan Hospital, China Academy of Chinese Medical Sciences, Beijing, China.

First Teaching Hospital of Tianjin University of Traditional Chinese Medicine, Tianjin, China.

出版信息

J Ginseng Res. 2023 Mar;47(2):228-236. doi: 10.1016/j.jgr.2022.03.003. Epub 2022 Mar 28.

Abstract

BACKGROUND

QiShen YiQi pills (QSYQ) is a Traditional Chinese Medicine (TCM) formula, which has a significant effect on the treatment of patients with myocardial infarction (MI) in clinical practice. However, the molecular mechanism of QSYQ regulation pyroptosis after MI is still not fully known. Hence, this study was designed to reveal the mechanism of the active ingredient in QSYQ.

METHODS

Integrated approach of network pharmacology and molecular docking, were conducted to screen active components and corresponding common target genes of QSYQ in intervening pyroptosis after MI. Subsequently, STRING and Cytoscape were applied to construct a PPI network, and obtain candidate active compounds. Molecular docking was performed to verify the binding ability of candidate components to pyroptosis proteins and oxygen-glucose deprivation (OGD) induced cardiomyocytes injuries were applied to explore the protective effect and mechanism of the candidate drug.

RESULTS

Two drug-likeness compounds were preliminarily selected, and the binding capacity between Ginsenoside Rh2 (Rh2) and key target High Mobility Group Box 1 (HMGB1)was validated in the form of hydrogen bonding. 2 μM Rh2 prevented OGD-induced H9c2 death and reduced IL-18 and IL-1β levels, possibly by decreasing the activation of the NLRP3 inflammasome, inhibiting the expression of p12-caspase1, and attenuating the level of pyroptosis executive protein GSDMD-N.

CONCLUSIONS

We propose that Rh2 of QSYQ can protect myocardial cells partially by ameliorating pyroptosis, which seems to have a new insight regarding the therapeutic potential for MI.

摘要

背景

芪参益气滴丸(QSYQ)是一种中药配方,在临床实践中对心肌梗死(MI)患者的治疗有显著效果。然而,QSYQ调控MI后细胞焦亡的分子机制仍不完全清楚。因此,本研究旨在揭示QSYQ中活性成分的作用机制。

方法

采用网络药理学和分子对接相结合的方法,筛选QSYQ干预MI后细胞焦亡的活性成分和相应的共同靶基因。随后,应用STRING和Cytoscape构建蛋白质-蛋白质相互作用(PPI)网络,并获得候选活性化合物。进行分子对接以验证候选成分与细胞焦亡蛋白的结合能力,并应用氧糖剥夺(OGD)诱导的心肌细胞损伤来探究候选药物的保护作用和机制。

结果

初步筛选出两种类药物化合物,并以氢键形式验证了人参皂苷Rh2(Rh2)与关键靶点高迁移率族蛋白B1(HMGB1)之间的结合能力。2 μM Rh2可预防OGD诱导的H9c2细胞死亡,并降低IL-18和IL-1β水平,可能是通过降低NLRP3炎性小体的激活、抑制p12-半胱天冬酶1的表达以及减弱细胞焦亡执行蛋白GSDMD-N的水平来实现的。

结论

我们提出QSYQ中的Rh2可通过改善细胞焦亡来部分保护心肌细胞,这似乎为MI的治疗潜力提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5910/10014185/87398d8b8bd5/ga1.jpg

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