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菖蒲属（天南星科；石柑子亚科）植物石柑的叶绿体全基因组序列

The complete chloroplast genome sequence of Linden (Araceae; Pothoideae).

作者信息

Wan Xiao, Ge Yaying, Pan Gangmin, Tian Danqing

机构信息

Zhejiang Institute of Landscape Plants and Flowers, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.

出版信息

Mitochondrial DNA B Resour. 2023 Mar 8;8(3):379-382. doi: 10.1080/23802359.2023.2185081. eCollection 2023.

DOI:10.1080/23802359.2023.2185081
PMID:36926637
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10013207/
Abstract

The chloroplast genome of Linden 1877 was assembled and analyzed in this study. The genome size is 162,560 bp, of which contains a large single-copy (LSC) region with 88,814 bp, a small single-copy (SSC) region with 22,856 bp, and two inverted repeat regions (IRA and IRB) with 25,445 bp, respectively. The plastome contains 124 genes, including 80 protein-coding genes, 37 tRNAs, six rRNAs and one pseudogene. Phylogenetic analysis indicated that is a member of Pothoideae and sister to .

摘要

本研究对1877年的椴树叶绿体基因组进行了组装和分析。基因组大小为162,560 bp，其中包含一个88,814 bp的大单拷贝（LSC）区域、一个22,856 bp的小单拷贝（SSC）区域以及两个分别为25,445 bp的反向重复区域（IRA和IRB）。叶绿体基因组包含124个基因，包括80个蛋白质编码基因、37个tRNA、6个rRNA和1个假基因。系统发育分析表明，它是石柑亚科的成员，并且是……的姐妹种。 （注：原文中“indicated that is a member of Pothoideae and sister to.”部分有缺失信息）

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e891/10013207/574f78608ad2/TMDN_A_2185081_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e891/10013207/9d3296df7c29/TMDN_A_2185081_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e891/10013207/b580a1806405/TMDN_A_2185081_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e891/10013207/574f78608ad2/TMDN_A_2185081_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e891/10013207/9d3296df7c29/TMDN_A_2185081_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e891/10013207/b580a1806405/TMDN_A_2185081_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e891/10013207/574f78608ad2/TMDN_A_2185081_F0003_B.jpg

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本文引用的文献

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Mol Ecol Resour. 2023 Apr;23(3):694-704. doi: 10.1111/1755-0998.13729. Epub 2023 Jan 1.
2
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.GetOrganelle：一个快速且通用的工具包，可用于准确从头组装细胞器基因组。
Genome Biol. 2020 Sep 10;21(1):241. doi: 10.1186/s13059-020-02154-5.
3
Complete Chloroplast Genomes of Anthurium huixtlense and Pothos scandens (Pothoideae, Araceae): Unique Inverted Repeat Expansion and Contraction Affect Rate of Evolution.
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4
Variant Review with the Integrative Genomics Viewer.使用综合基因组浏览器进行变异审查。
Cancer Res. 2017 Nov 1;77(21):e31-e34. doi: 10.1158/0008-5472.CAN-17-0337.
5
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6
GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
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