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qPCR 检测化妆品中存活的蜡样芽胞杆菌群细胞。

qPCR detection of viable Bacillus cereus group cells in cosmetic products.

机构信息

FDA, Office of Regulatory Science, College Park, MD, USA.

Oak Ridge Institute for Science and Education, Oak Ridge, TN, 37831, USA.

出版信息

Sci Rep. 2023 Mar 18;13(1):4477. doi: 10.1038/s41598-023-31128-3.

Abstract

Reference methods for microbiological safety assessments of cosmetics rely on culture methods that reveal colonies of live microorganisms on growth media. Rapid molecular technologies, such as qPCR, detects the presence of target DNA in samples from dead and viable cells. DNA intercalating dyes, such as propidium monoazide (PMAxx), are capable of restricting PCR amplification to viable microbial cells. Here we developed singleplex and multiplex real time (qPCR) assays for the detection of Bacillus cereus (B. cereus) using 16S rRNA and phosphatidylcholine-specific phospholipase C (PLC) gene specific sequences coupled with PMAxx. The limit of detection was determined to be ~ 1 log CFU/ml for 16S rRNA and 3 log CFU/ml for PLC detection in pure culture using an eye shadow isolate, B. cereus 3A. We assessed the inclusivity and exclusivity of our qPCR assays using 212 strains, including 143 members of B. cereus, 38 non- B. cereus. and 31 non-Bacillus species; inclusivity was 100% for the 16S rRNA and 97.9% for the PLC targets; the exclusivity was 100% for 16S rRNA and 98.6% for PLC targets. These qPCR assays were then used to assess samples of commercial cosmetics: one set of liquid face toners (N = 3), artificially contaminated with B. cereus 3A, and one set of powdered cosmetics (N = 8), previously determined to be contaminated with B. cereus. For some samples, test portions were analyzed by qPCR in parallel, with and without PMAxx treatment. All test portions were simultaneously streaked on BACARA plates to confirm viable cells of B. cereus, according to the culture method. We found no difference in sensitivity between the singleplex and the multiplex qPCR assays (P > 0.05). Inoculated samples that did not recover B. cereus on plates still showed amplification of the DNA targets. However, that amplification was significantly delayed in PMAxx -treated samples (P < 0.0001) with C value differences of 7.82 for 16S rRNA and 7.22 for PLC. Likewise, amplification delay was significant (P < 0.0001) with inoculated samples that recovered B. cereus on plates with C value differences of 2.96 and 2.36 for 16S rRNA and PLC, respectively, demonstrating the presence of dead cells in the samples. All our qPCR results correlated with detection on BACARA plates (kappa, k = 0.99), independently of the presence of PMAxx in the PCR assays. Nevertheless, the amplification threshold with PMAxx dyes was significantly higher than the non-PMAxx dyes. Our findings confirm qPCR can be used for more rapid detection of microorganisms in cosmetics, including B. cereus, and selective detection of viable cells can be improved using PMAxx dyes.

摘要

化妆品微生物安全性评估的参考方法依赖于培养方法,该方法可在生长培养基上显示活微生物的菌落。快速分子技术,如 qPCR,可以检测来自死细胞和活细胞的样品中目标 DNA 的存在。DNA 嵌入染料,如吖啶单甲醚(PMAxx),能够限制 PCR 扩增到活微生物细胞。在这里,我们开发了用于检测蜡样芽胞杆菌(B. cereus)的单重和多重实时(qPCR)检测,使用 16S rRNA 和磷脂酰胆碱特异性磷脂酶 C(PLC)基因特异性序列与 PMAxx 结合。使用眼影分离株 B. cereus 3A,在纯培养物中,16S rRNA 的检测限为 ~1 log CFU/ml,PLC 的检测限为 3 log CFU/ml。我们使用 212 株细菌评估了我们的 qPCR 检测的包容性和排他性,包括 143 株蜡样芽胞杆菌、38 株非蜡样芽胞杆菌和 31 株非芽孢杆菌;16S rRNA 和 PLC 靶标对 100%具有包容性;16S rRNA 的排他性为 100%,PLC 靶标为 98.6%。然后,这些 qPCR 检测用于评估商业化妆品的样本:一组液体面部爽肤水(N=3),人工污染有 B. cereus 3A,一组粉状化妆品(N=8),先前被污染有 B. cereus。对于一些样本,用 qPCR 平行分析了未经处理和经 PMAxx 处理的测试部分。所有测试部分均同时在 BACARA 平板上划线,根据培养方法确认蜡样芽胞杆菌的活细胞。我们发现单重和多重 qPCR 检测之间的灵敏度没有差异(P>0.05)。未在平板上回收蜡样芽胞杆菌的接种样本仍显示 DNA 靶标的扩增。然而,PMAxx 处理样本的扩增明显延迟(P<0.0001),16S rRNA 和 PLC 的 C 值差异分别为 7.82 和 7.22。同样,在平板上回收蜡样芽胞杆菌的接种样本中,16S rRNA 和 PLC 的 C 值差异分别为 2.96 和 2.36,也观察到扩增延迟(P<0.0001),表明样品中存在死细胞。我们所有的 qPCR 结果都与 BACARA 平板上的检测结果相关(kappa,k=0.99),与 PCR 检测中是否存在 PMAxx 无关。然而,PMAxx 染料的扩增阈值明显高于非 PMAxx 染料。我们的研究结果证实,qPCR 可用于更快速地检测化妆品中的微生物,包括蜡样芽胞杆菌,并且使用 PMAxx 染料可以改善活细胞的选择性检测。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b0b/10024758/f540fd66ba5a/41598_2023_31128_Fig1_HTML.jpg

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