Inwongwan Sahutchai, Pekkoh Jeeraporn, Pumas Chayakorn, Sattayawat Pachara
Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand.
Research Center of Microbial Diversity and Sustainable Utilizations, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand.
Front Microbiol. 2023 Mar 2;14:1143770. doi: 10.3389/fmicb.2023.1143770. eCollection 2023.
A metabolic model, representing all biochemical reactions in a cell, is a prerequisite for several approaches in systems biology used to explore the metabolic phenotype of an organism. Despite the use of in diverse industrial applications and as a biological model, there is limited understanding of its metabolic network capacity. The unavailability of the completed genome data and the highly complex evolution of are significant obstacles to the reconstruction and analysis of its genome-scale metabolic model. In this mini-review, we discuss the current state and challenges of metabolic network reconstruction in . We have collated and present the available relevant data for the metabolic network reconstruction of , which could be used to improve the quality of the metabolic model of . Furthermore, we deliver the potential applications of the model in metabolic engineering. Altogether, it is supposed that this mini-review would facilitate the investigation of metabolic networks in and further lay out a direction for model-assisted metabolic engineering.
一个代表细胞中所有生化反应的代谢模型,是系统生物学中用于探索生物体代谢表型的几种方法的先决条件。尽管它在各种工业应用中被使用并作为一种生物学模型,但其代谢网络能力的理解仍然有限。完整基因组数据的不可用以及其高度复杂的进化是重建和分析其基因组规模代谢模型的重大障碍。在这篇小型综述中,我们讨论了[具体物种]代谢网络重建的现状和挑战。我们整理并展示了用于[具体物种]代谢网络重建的可用相关数据,这些数据可用于提高[具体物种]代谢模型的质量。此外,我们阐述了该模型在代谢工程中的潜在应用。总的来说,本小型综述有望促进对[具体物种]代谢网络的研究,并进一步为模型辅助的代谢工程指明方向。