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发现可解释的医疗过程模型:创伤复苏中的案例研究。

Discovering interpretable medical process models: A case study in trauma resuscitation.

机构信息

Electrical and Computer Engineering Department, Rutgers University, 94 Brett Road, Piscataway, NJ 08854, USA.

College of Computing and Informatics, Drexel University 3675 Market Street, Philadelphia, PA 19104, USA.

出版信息

J Biomed Inform. 2023 Apr;140:104344. doi: 10.1016/j.jbi.2023.104344. Epub 2023 Mar 20.

Abstract

Understanding the actual work (i.e., "work-as-done") rather than theorized work (i.e., "work-as-imagined") during complex medical processes is critical for developing approaches that improve patient outcomes. Although process mining has been used to discover process models from medical activity logs, it often omits critical steps or produces cluttered and unreadable models. In this paper, we introduce a TraceAlignment-based ProcessDiscovery method called TAD Miner to build interpretable process models for complex medical processes. TAD Miner creates simple linear process models using a threshold metric that optimizes the consensus sequence to represent the backbone process, and then identifies both concurrent activities and uncommon-but-critical activities to represent the side branches. TAD Miner also identifies the locations of repeated activities, an essential feature for representing medical treatment steps. We conducted a study using activity logs of 308 pediatric trauma resuscitations to develop and evaluate TAD Miner. TAD Miner was used to discover process models for five resuscitation goals, including establishing intravenous (IV) access, administering non-invasive oxygenation, performing back assessment, administering blood transfusion, and performing intubation. We quantitively evaluated the process models with several complexity and accuracy metrics, and performed qualitative evaluation with four medical experts to assess the accuracy and interpretability of the discovered models. Through these evaluations, we compared the performance of our method to that of two state-of-the-art process discovery algorithms: Inductive Miner and Split Miner. The process models discovered by TAD Miner had lower complexity and better interpretability than the state-of-the-art methods, and the fitness and precision of the models were comparable. We used the TAD process models to identify (1) the errors and (2)the best locations for the tentative steps in knowledge-driven expert models. The knowledge-driven models were revised based on the modifications suggested by the discovered models. The improved modeling using TAD Miner may enhance understanding of complex medical processes.

摘要

理解复杂医疗过程中的实际工作(即“实际工作”)而非理论化的工作(即“想象中的工作”)对于开发改善患者预后的方法至关重要。尽管流程挖掘已被用于从医疗活动日志中发现流程模型,但它经常会忽略关键步骤或生成混乱且难以理解的模型。在本文中,我们引入了一种基于跟踪对齐的流程发现方法 TAD Miner,用于为复杂医疗流程构建可解释的流程模型。TAD Miner 使用一个阈值指标创建简单的线性流程模型,该指标优化共识序列以表示骨干流程,然后识别并发活动和罕见但关键的活动以表示侧支。TAD Miner 还识别重复活动的位置,这是表示医疗治疗步骤的重要特征。我们使用 308 例儿科创伤复苏的活动日志进行了一项研究,以开发和评估 TAD Miner。TAD Miner 用于发现五个复苏目标的流程模型,包括建立静脉(IV)通路、进行无创氧合、进行背部评估、进行输血和进行插管。我们使用几个复杂性和准确性指标对流程模型进行定量评估,并使用四名医学专家进行定性评估,以评估发现模型的准确性和可解释性。通过这些评估,我们将我们的方法与两种最先进的流程发现算法(Inductive Miner 和 Split Miner)的性能进行了比较。TAD Miner 发现的流程模型比最先进的方法具有更低的复杂性和更好的可解释性,并且模型的拟合度和精度相当。我们使用 TAD 流程模型来识别(1)错误和(2)知识驱动的专家模型中暂定步骤的最佳位置。基于发现模型提出的修改,对知识驱动模型进行了修订。使用 TAD Miner 进行的改进建模可能会增强对复杂医疗过程的理解。

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本文引用的文献

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Process mining for healthcare: Characteristics and challenges.医疗保健中的流程挖掘:特点与挑战。
J Biomed Inform. 2022 Mar;127:103994. doi: 10.1016/j.jbi.2022.103994. Epub 2022 Jan 29.
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Medical Workflow Modeling Using Alignment-Guided State-Splitting HMM.使用对齐引导状态分裂隐马尔可夫模型的医疗工作流建模
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Process-oriented Iterative Multiple Alignment for Medical Process Mining.面向医疗过程挖掘的过程导向迭代多序列比对
IEEE Int Conf Data Min Workshops. 2017 Nov;2017:438-445. doi: 10.1109/ICDMW.2017.63. Epub 2017 Dec 18.
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Process mining in healthcare: A literature review.医疗保健中的流程挖掘:文献综述
J Biomed Inform. 2016 Jun;61:224-36. doi: 10.1016/j.jbi.2016.04.007. Epub 2016 Apr 22.
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Advanced trauma life support (ATLS®): the ninth edition.高级创伤生命支持(ATLS®):第九版。
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Workflow mining and outlier detection from clinical activity logs.从临床活动日志中进行工作流挖掘和异常检测。
J Biomed Inform. 2012 Dec;45(6):1185-90. doi: 10.1016/j.jbi.2012.08.003. Epub 2012 Aug 19.

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