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寻找骨肉瘤双作用多靶点抑制剂的计算方法

Computational approach in searching for dual action multitarget inhibitors for osteosarcoma.

作者信息

Gani Maria Apriliani, Nurhan Ahmad Dzulikri, Hadinar Putri Bulan Rhea Kaulika, Suyatno Andhi, Khan Shakil Ahmed, Ardianto Chrismawan, Rantam Fedik Abdul, Khotib Junaidi

机构信息

Department of Pharmacy Practice, Faculty of Pharmacy, Universitas Airlangga, Surabaya, Indonesia.

Laboratorium of Virology and Immunology, Faculty of Veterinary Medicine, Universitas Airlangga, Surabaya, Indonesia.

出版信息

J Adv Pharm Technol Res. 2023 Jan-Mar;14(1):18-23. doi: 10.4103/japtr.japtr_541_22. Epub 2023 Jan 20.

Abstract

Osteosarcoma is a common primary malignant bone tumor that typically manifests in the second decade of life. This study aimed to identify osteogenic compounds that potentially serve as multitarget inhibitors for osteosarcoma. The study was a molecular docking study of nine Food and Drug Administration-approved compounds with osteogenic properties to the key membrane proteins of osteosarcoma. The ligands used were raloxifene, simvastatin, dexamethasone, risedronate, ibandronate, zoledronic acid, ascorbic acid, alendronate, and β-glycerophosphate, whereas the target proteins used were RET, fibroblast growth factor receptor 1, KIT, PDGFRA, VEGFR1, and VEGFR2. Chem3D version 15.0.0.106 was used for ligand preparation, and AutoDockTools version 1.5.6 was used for protein preparation, whereas molecular docking was conducted using AutoDock Vina. Raloxifene, simvastatin, and dexamethasone had the lowest binding activity to the target proteins. The binding affinity of raloxifene was from -8.4 to -10.0 kcal mol, that of simvastatin was -8.3 to -9.2 kcal mol, whereas dexamethasone ranged from -6.9 to -9.1 kcal mol. Most types of interactions were hydrophobically followed by hydrogen bonding. The current study suggests that raloxifene, simvastatin, and dexamethasone have the potential to act as multitarget inhibitors for osteosarcoma with the ability to induce bone remodeling.

摘要

骨肉瘤是一种常见的原发性恶性骨肿瘤,通常在生命的第二个十年出现。本研究旨在鉴定可能作为骨肉瘤多靶点抑制剂的成骨化合物。该研究是对九种美国食品药品监督管理局批准的具有成骨特性的化合物与骨肉瘤关键膜蛋白进行分子对接研究。所用的配体为雷洛昔芬、辛伐他汀、地塞米松、利塞膦酸盐、伊班膦酸盐、唑来膦酸、抗坏血酸、阿仑膦酸盐和β-甘油磷酸,而所用的靶蛋白为RET、成纤维细胞生长因子受体1、KIT、血小板衍生生长因子受体α、血管内皮生长因子受体1和血管内皮生长因子受体2。使用Chem3D 15.0.0.106版本进行配体制备,使用AutoDockTools 1.5.6版本进行蛋白制备,而分子对接使用AutoDock Vina进行。雷洛昔芬、辛伐他汀和地塞米松对靶蛋白的结合活性最低。雷洛昔芬的结合亲和力为-8.4至-10.0千卡/摩尔,辛伐他汀为-8.3至-9.2千卡/摩尔,而地塞米松的范围为-6.9至-9.1千卡/摩尔。大多数类型的相互作用先是疏水作用,然后是氢键作用。当前研究表明,雷洛昔芬、辛伐他汀和地塞米松有潜力作为骨肉瘤的多靶点抑制剂,具有诱导骨重塑的能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7463/10026319/1ae3cf3ef20e/JAPTR-14-18-g001.jpg

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