School of Agriculture, Food and Wine, Waite Research Institute, University of Adelaide, Glen Osmond, SA, 5064, Australia.
School of Life and Environmental Sciences, University of Sydney, Plant Breeding Institute, 107 Cobbitty Road, Cobbitty, NSW, 2570, Australia.
Theor Appl Genet. 2023 Mar 23;136(4):72. doi: 10.1007/s00122-023-04253-w.
Here, we provide an updated set of guidelines for naming genes in wheat that has been endorsed by the wheat research community. The last decade has seen a proliferation in genomic resources for wheat, including reference- and pan-genome assemblies with gene annotations, which provide new opportunities to detect, characterise, and describe genes that influence traits of interest. The expansion of genetic information has supported growth of the wheat research community and catalysed strong interest in the genes that control agronomically important traits, such as yield, pathogen resistance, grain quality, and abiotic stress tolerance. To accommodate these developments, we present an updated set of guidelines for gene nomenclature in wheat. These guidelines can be used to describe loci identified based on morphological or phenotypic features or to name genes based on sequence information, such as similarity to genes characterised in other species or the biochemical properties of the encoded protein. The updated guidelines provide a flexible system that is not overly prescriptive but provides structure and a common framework for naming genes in wheat, which may be extended to related cereal species. We propose these guidelines be used henceforth by the wheat research community to facilitate integration of data from independent studies and allow broader and more efficient use of text and data mining approaches, which will ultimately help further accelerate wheat research and breeding.
在这里,我们提供了一套经过小麦研究界认可的更新的小麦基因命名指南。过去十年中,小麦的基因组资源不断增加,包括参考基因组和泛基因组组装以及基因注释,这为检测、描述和描述影响感兴趣性状的基因提供了新的机会。遗传信息的扩展支持了小麦研究界的发展,并激发了人们对控制农艺重要性状(如产量、抗病性、谷物品质和非生物胁迫耐受性)的基因的强烈兴趣。为了适应这些发展,我们提出了一套经过更新的小麦基因命名指南。这些指南可用于描述基于形态或表型特征鉴定的基因,也可用于根据序列信息命名基因,例如与在其他物种中鉴定的基因的相似性或编码蛋白的生化特性。更新后的指南提供了一个灵活的系统,不过分规范,但为小麦基因命名提供了结构和通用框架,也可扩展到相关的谷类物种。我们建议小麦研究界今后使用这些指南,以促进独立研究数据的整合,并允许更广泛和更有效地使用文本和数据挖掘方法,这最终将有助于进一步加速小麦研究和育种。