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雷公藤红素生物合成途径的基因组及特征

The genome of and characterization of the celastrol biosynthesis pathway.

作者信息

Pei Tianlin, Yan Mengxiao, Kong Yu, Fan Hang, Liu Jie, Cui Mengying, Fang Yumin, Ge Binjie, Yang Jun, Zhao Qing

机构信息

Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden, Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Shanghai, China.

State Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, China.

出版信息

GigaByte. 2021 Feb 28;2021:gigabyte14. doi: 10.46471/gigabyte.14. eCollection 2021.

Abstract

is a vine from the Celastraceae family that is used in traditional Chinese medicine (TCM). The active ingredient, celastrol, is a friedelane-type pentacyclic triterpenoid with putative roles as an antitumor, immunosuppressive, and anti-obesity agent. Here, we report a reference genome assembly of with high-quality annotation using a hybrid sequencing strategy. The total genome size obtained is 340.12 Mb, with a contig N50 value of 3.09 Mb. We successfully anchored 91.02% of sequences into 23 pseudochromosomes using high-throughput chromosome conformation capture (Hi-C) technology. The super-scaffold N50 value was 13.03 Mb. We also annotated 31,593 structural genes, with a repeat percentage of 44.31%. These data demonstrate that diverged from Malpighiales species approximately 102.4 million years ago. By integrating genome, transcriptome and metabolite analyses, as well as and enzyme assays of two cytochrome P450 (CYP450) genes, and , it is possible to investigate the second biosynthesis step of celastrol and demonstrate that this was derived from a common ancestor. These data provide insights and resources for further investigation of pathways related to celastrol, and valuable information to aid the conservation of resources, as well as understand the evolution of Celastrales.

摘要

是一种来自卫矛科的藤本植物,在中国传统医学中使用。其活性成分雷公藤红素是一种 friedelane 型五环三萜类化合物,具有抗肿瘤、免疫抑制和抗肥胖作用。在此,我们报告了使用混合测序策略进行的高质量注释的参考基因组组装。获得的总基因组大小为 340.12 Mb,重叠群 N50 值为 3.09 Mb。我们使用高通量染色体构象捕获(Hi-C)技术成功地将 91.02% 的序列锚定到 23 条假染色体中。超级支架 N50 值为 13.03 Mb。我们还注释了 31,593 个结构基因,重复率为 44.31%。这些数据表明,大约在 1.024 亿年前与金虎尾目物种分化。通过整合基因组、转录组和代谢物分析,以及对两个细胞色素 P450(CYP450)基因 CYP716A55v2 和 CYP716A122 的体外和体内酶活性测定,有可能研究雷公藤红素的第二步生物合成,并证明其起源于一个共同的祖先。这些数据为进一步研究与雷公藤红素相关的途径提供了见解和资源,以及有助于资源保护和了解卫矛目的进化的有价值信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c069/10038137/8919ce9c1864/gigabyte-2021-14-g001.jpg

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