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遗传与代谢系统的起源:进化结构洞察

The origin of genetic and metabolic systems: Evolutionary structuralinsights.

作者信息

Deng Shaojie

机构信息

Chongqing (Fengjie) Municipal Bureau of Planning and Natural Resources, China.

出版信息

Heliyon. 2023 Mar 11;9(3):e14466. doi: 10.1016/j.heliyon.2023.e14466. eCollection 2023 Mar.

Abstract

DNA is derived from reverse transcription and its origin is related to reverse transcriptase, DNA polymerase and integrase. The gene structure originated from the evolution of the first RNA polymerase. Thus, an explanation of the origin of the genetic system must also explain the evolution of these enzymes. This paper proposes a polymer structure model, termed the stable complex evolution model, which explains the evolution of enzymes and functional molecules. Enzymes evolved their functions by forming locally tightly packed complexes with specific substrates. A metabolic reaction can therefore be considered to be the result of adaptive evolution in this way when a certain essential molecule is lacking in a cell. The evolution of the primitive genetic and metabolic systems was thus coordinated and synchronized. According to the stable complex model, almost all functional molecules establish binding affinity and specific recognition through complementary interactions, and functional molecules therefore have the nature of being auto-reactive. This is thermodynamically favorable and leads to functional duplication and self-organization. Therefore, it can be speculated that biological systems have a certain tendency to maintain functional stability or are influenced by an inherent selective power. The evolution of dormant bacteria may support this hypothesis, and inherent selectivity can be unified with natural selection at the molecular level.

摘要

DNA来源于逆转录,其起源与逆转录酶、DNA聚合酶和整合酶有关。基因结构起源于第一种RNA聚合酶的进化。因此,对遗传系统起源的解释也必须解释这些酶的进化。本文提出了一种聚合物结构模型,称为稳定复合物进化模型,该模型解释了酶和功能分子的进化。酶通过与特定底物形成局部紧密堆积的复合物来进化其功能。因此,当细胞中缺乏某种必需分子时,代谢反应可以被认为是以这种方式进行适应性进化的结果。原始遗传和代谢系统的进化因此是协调和同步的。根据稳定复合物模型,几乎所有功能分子都通过互补相互作用建立结合亲和力和特异性识别,因此功能分子具有自反应性。这在热力学上是有利的,并导致功能复制和自组织。因此,可以推测生物系统具有维持功能稳定性的某种倾向,或者受到内在选择力的影响。休眠细菌的进化可能支持这一假设,并且内在选择性可以在分子水平上与自然选择统一起来。

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