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Intratumoral Heterogeneity and Clonal Evolution Induced by HPV Integration.
Cancer Discov. 2023 Apr 3;13(4):910-927. doi: 10.1158/2159-8290.CD-22-0900.
2
Human Papillomavirus Integration Strictly Correlates with Global Genome Instability in Head and Neck Cancer.
Mol Cancer Res. 2022 Sep 2;20(9):1420-1428. doi: 10.1158/1541-7786.MCR-21-0831.
4
Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription.
Clin Cancer Res. 2021 Dec 15;27(24):6772-6786. doi: 10.1158/1078-0432.CCR-21-2484. Epub 2021 Sep 21.
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Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED.
Nat Biotechnol. 2021 Apr;39(4):431-441. doi: 10.1038/s41587-020-0731-9. Epub 2020 Nov 30.
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Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers.
Nat Genet. 2020 Sep;52(9):891-897. doi: 10.1038/s41588-020-0678-2. Epub 2020 Aug 17.
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The D2 and D3 Sublineages of Human Papilloma Virus 16-Positive Cervical Cancer in Guatemala Differ in Integration Rate and Age of Diagnosis.
Cancer Res. 2020 Sep 15;80(18):3803-3809. doi: 10.1158/0008-5472.CAN-20-0029. Epub 2020 Jul 6.
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Transcriptome assembly from long-read RNA-seq alignments with StringTie2.
Genome Biol. 2019 Dec 16;20(1):278. doi: 10.1186/s13059-019-1910-1.
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VISDB: a manually curated database of viral integration sites in the human genome.
Nucleic Acids Res. 2020 Jan 8;48(D1):D633-D641. doi: 10.1093/nar/gkz867.

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