Suppr超能文献

抗氧化酶活性、分子对接研究、MM-GBSA 和淡水鱼中毒死蜱的分子动力学。

Antioxidant enzyme activities, molecular docking studies, MM-GBSA, and molecular dynamic of chlorpyrifos in freshwater fish .

机构信息

Department of Fisheries, Faculty of Agriculture, Bingol University, Bingöl, Turkey.

Department of Veterinary Health, Food Agriculture and Livestock Vocational School, Bingöl University, Bingöl, Turkey.

出版信息

J Biomol Struct Dyn. 2024 Jan-Feb;42(1):163-176. doi: 10.1080/07391102.2023.2192807. Epub 2023 Mar 28.

Abstract

Chlorpyrifos (CPF), which was started to be used in 1965, is a broad spectrum organophosphate insecticide that is used more and more day by day. Commonly used to control pests in farmland and homes, CPF is more toxic to fish than organochlorine compounds. CPF poses a serious threat to the health of humans and aquatic organisms. This paper studies the relationship between CPF exposure and antioxidant enzyme activities in gill, kidney and liver tissues of . Different time intervals (12, 24, 48, 72, and 96 h) and CPF doses (55 and 110 µg L) were used in the study. Spectrophotometrical measures were taken in all tissues for antioxidant enzyme activities and malondialdehyde (MDA) levels, as indices of the lipid peroxidation (LPO). A positive relationship between CPF and MDA levels was found in the study at a statistically significant level ( < 0.05). The study also found a negative relationship between CPF levels and catalase (CAT), superoxide dismutase (SOD), glutathione peroxidase (GPx), and glutathione reductase (GR) activity. Independent variables in the study can act as biomarkers of CPF exposure. The study recommends employing proper ecotoxicological risk evaluations in cases of CPF usage as a pesticide. The activities of the studied molecules against various proteins that are crystal structure of human peroxiredoxin 5 (PDB ID: 1HD2) has docking score value is -2.67, crystal structure of Bovine Xanthine Oxidase (PDB ID: 3NRZ) has docking score value is -3.76, and crystal structure of antibacterial FabH (PDB ID: 4Z8D) has docking score value is -3.16, were compared. Molecular dynamic (MD) calculations were made in 100 ns. MM/GBSA methods are calculated binding free energy. Afterwards, ADME/T analysis was performed to examine the some properties of the molecules.Communicated by Ramaswamy H. Sarma.

摘要

毒死蜱(CPF)于 1965 年开始使用,是一种广谱有机磷杀虫剂,使用量日益增加。CPF 常用于控制农田和家庭中的害虫,其对鱼类的毒性比有机氯化合物更强。CPF 对人类和水生生物的健康构成严重威胁。本文研究了 CPF 暴露与. 鳃、肾和肝组织中抗氧化酶活性之间的关系。在研究中使用了不同的时间间隔(12、24、48、72 和 96 小时)和 CPF 剂量(55 和 110 µg L)。在所有组织中都采用分光光度法测量抗氧化酶活性和丙二醛(MDA)水平,作为脂质过氧化(LPO)的指标。研究发现 CPF 与 MDA 水平之间存在正相关关系,在统计学上具有显著性(<0.05)。研究还发现 CPF 水平与过氧化氢酶(CAT)、超氧化物歧化酶(SOD)、谷胱甘肽过氧化物酶(GPx)和谷胱甘肽还原酶(GR)活性呈负相关。研究中的自变量可以作为 CPF 暴露的生物标志物。研究建议在使用 CPF 作为农药的情况下进行适当的生态毒理学风险评估。研究了分子对接对接得分值为-2.67 的人过氧化物酶 5 晶体结构(PDB ID:1HD2)、对接得分值为-3.76 的牛黄嘌呤氧化酶晶体结构(PDB ID:3NRZ)和对接得分值为-3.16 的抗菌 FabH 晶体结构(PDB ID:4Z8D)的对接得分值,进行了分子动力学(MD)计算在 100 ns 内。使用 MM/GBSA 方法计算结合自由能。随后进行了 ADME/T 分析,以检查分子的一些性质。由 Ramaswamy H. Sarma 交流。

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验