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基于线粒体DNA标记的肯尼亚西部[具体研究对象]的遗传多样性与种群结构

Genetic Diversity and Population Structure of in Western Kenya Based on Mitochondrial DNA Marker .

作者信息

Debrah Isaiah, Ochwedo Kevin O, Otambo Wilfred O, Machani Maxwell G, Magomere Edwin O, Onyango Shirley A, Zhong Daibin, Amoah Linda E, Githeko Andrew K, Afrane Yaw A, Yan Guiyun

机构信息

West Africa Centre for Cell Biology of Infectious Pathogen (WACCBIP), University of Ghana, Accra P.O. Box LG 54, Ghana.

Sub-Saharan Africa International Centre of Excellence for Malaria Research, Homabay P.O. Box 199-40300, Kenya.

出版信息

Insects. 2023 Mar 9;14(3):273. doi: 10.3390/insects14030273.

Abstract

The mitochondrial marker, was employed to assess the genetic structure and diversity of a very important malaria vector in Africa that adapt and colonize different ecological niches in western Kenya. Mosquitoes were collected using mechanical aspirators in four areas (Bungoma, Port Victoria, Kombewa, and Migori) in western Kenya. Following morphological identification, PCR was used to confirm the species. The gene was amplified, sequenced, and analyzed to determine genetic diversity and population structure. A total of 126 (Port Victoria-38, Migori-38, Bungoma-22, and Kombewa-28) sequences of were used for population genetic analysis. had a high haplotype diversity (Hd = 0.97 to 0.98) but low nucleotide diversity (Π = 0.004 to 0.005). The neutrality test revealed negative Tajima's and Fs values indicating an excess of low-frequency variation. This could be attributed to either population expansion or negative selection pressure across all the populations. No genetic or structural differentiation (Fst = -0.01) and a high level of gene flow (Gamma St, Nm = 17.99 to 35.22) were observed among the populations. Population expansion suggests the high adaptability of this species to various ecological requirements, hence sustaining its vectorial capacity and malaria transmission.

摘要

线粒体标记被用于评估非洲一种非常重要的疟疾传播媒介的遗传结构和多样性,这种媒介在肯尼亚西部适应并定殖于不同的生态位。在肯尼亚西部的四个地区(邦戈马、维多利亚港、孔贝瓦和米戈里)使用机械吸气器收集蚊子。经过形态学鉴定后,使用聚合酶链式反应(PCR)来确认物种。对该基因进行扩增、测序和分析,以确定遗传多样性和种群结构。总共126条(维多利亚港 - 38条、米戈里 - 38条、邦戈马 - 22条和孔贝瓦 - 28条)该基因序列用于种群遗传学分析。该基因具有高单倍型多样性(Hd = 0.97至0.98)但低核苷酸多样性(Π = 0.004至0.005)。中性检验显示塔希玛氏D值和Fs值为负,表明低频变异过多。这可能归因于所有种群的种群扩张或负选择压力。在各群体之间未观察到遗传或结构分化(Fst = -0.01),并且观察到高水平的基因流(伽马氏St,Nm = 17.99至35.22)。种群扩张表明该物种对各种生态需求具有高度适应性,从而维持其传播能力和疟疾传播。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92d0/10052146/a35841f95c33/insects-14-00273-g001.jpg

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