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全癌种系统分析确定跨膜蛋白158为一种潜在的治疗、预后和免疫生物标志物。

Systematic pan-cancer analysis identifies transmembrane protein 158 as a potential therapeutic, prognostic and immunological biomarker.

作者信息

Li Jiayi, Hou Haiguang, Sun Jinhao, Ding Zhaoxi, Xu Yingkun, Li Guibao

机构信息

School of Management, Shandong University, Jinan, 250100, Shandong, China.

School of Graduate, Hanyang University, Seoul, 04763, South Korea.

出版信息

Funct Integr Genomics. 2023 Mar 28;23(2):105. doi: 10.1007/s10142-023-01032-0.

Abstract

The purpose of this study was to investigate the expression significance, predictive value, immunologic function, and biological role of transmembrane protein 158 (TMEM158) in the development of pan-cancer. To achieve this, we utilized data from multiple databases, including TCGA, GTEx, GEPIA, and TIMER, to collect gene transcriptome, patient prognosis, and tumor immune data. We evaluated the association of TMEM158 with patient prognosis, tumor mutational burden (TMB), and microsatellite instability (MSI) in pan-cancer samples. We performed immune checkpoint gene co-expression analysis and gene set enrichment analysis (GSEA) to better understand the immunologic function of TMEM158. Our findings revealed that TMEM158 was significantly differentially expressed between most types of cancer tissues and their adjacent normal tissues and was associated with prognosis. Moreover, TMEM158 was significantly correlated with TMB, MSI, and tumor immune cell infiltration in multiple cancers. Co-expression analysis of immune checkpoint genes showed that TMEM158 was related to the expression of several common immune checkpoint genes, especially CTLA4 and LAG3. Gene enrichment analysis further revealed that TMEM158 was involved in multiple immune-related biological pathways in pan-cancer. Overall, this systematic pan-cancer analysis suggests that TMEM158 is generally highly expressed in various cancer tissues and is closely related to patient prognosis and survival across multiple cancer types. TMEM158 may serve as a significant predictor of cancer prognosis and modulate immune responses to various types of cancer.

摘要

本研究的目的是调查跨膜蛋白158(TMEM158)在泛癌发生发展中的表达意义、预测价值、免疫功能及生物学作用。为实现这一目的,我们利用了来自多个数据库的数据,包括TCGA、GTEx、GEPIA和TIMER,以收集基因转录组、患者预后及肿瘤免疫数据。我们评估了TMEM158与泛癌样本中患者预后、肿瘤突变负荷(TMB)及微卫星不稳定性(MSI)的相关性。我们进行了免疫检查点基因共表达分析和基因集富集分析(GSEA),以更好地了解TMEM158的免疫功能。我们的研究结果显示,TMEM158在大多数类型的癌组织及其相邻正常组织之间存在显著差异表达,且与预后相关。此外,TMEM158在多种癌症中与TMB、MSI及肿瘤免疫细胞浸润显著相关。免疫检查点基因的共表达分析表明,TMEM158与几种常见免疫检查点基因的表达有关,尤其是CTLA4和LAG3。基因富集分析进一步显示,TMEM158参与了泛癌中多个免疫相关生物学途径。总体而言,这项系统性泛癌分析表明,TMEM158在各种癌组织中普遍高表达,且与多种癌症类型患者的预后和生存密切相关。TMEM158可能作为癌症预后的重要预测指标,并调节对各种类型癌症的免疫反应。

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