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在安第斯阿塔卡马沙漠植被带相关土壤细菌群落中检验压力梯度假说

Testing the stress gradient hypothesis in soil bacterial communities associated with vegetation belts in the Andean Atacama Desert.

作者信息

Mandakovic Dinka, Aguado-Norese Constanza, García-Jiménez Beatriz, Hodar Christian, Maldonado Jonathan E, Gaete Alexis, Latorre Mauricio, Wilkinson Mark D, Gutiérrez Rodrigo A, Cavieres Lohengrin A, Medina Joaquín, Cambiazo Verónica, Gonzalez Mauricio

机构信息

Millennium Institute Center for Genome Regulation, Santiago, Chile.

Bioinformatic and Gene Expression Laboratory, INTA-Universidad de Chile, Santiago, Chile.

出版信息

Environ Microbiome. 2023 Mar 28;18(1):24. doi: 10.1186/s40793-023-00486-w.

Abstract

BACKGROUND

Soil microorganisms are in constant interaction with plants, and these interactions shape the composition of soil bacterial communities by modifying their environment. However, little is known about the relationship between microorganisms and native plants present in extreme environments that are not affected by human intervention. Using high-throughput sequencing in combination with random forest and co-occurrence network analyses, we compared soil bacterial communities inhabiting the rhizosphere surrounding soil (RSS) and the corresponding bulk soil (BS) of 21 native plant species organized into three vegetation belts along the altitudinal gradient (2400-4500 m a.s.l.) of the Talabre-Lejía transect (TLT) in the slopes of the Andes in the Atacama Desert. We assessed how each plant community influenced the taxa, potential functions, and ecological interactions of the soil bacterial communities in this extreme natural ecosystem. We tested the ability of the stress gradient hypothesis, which predicts that positive species interactions become increasingly important as stressful conditions increase, to explain the interactions among members of TLT soil microbial communities.

RESULTS

Our comparison of RSS and BS compartments along the TLT provided evidence of plant-specific microbial community composition in the RSS and showed that bacterial communities modify their ecological interactions, in particular, their positive:negative connection ratios in the presence of plant roots at each vegetation belt. We also identified the taxa driving the transition of the BS to the RSS, which appear to be indicators of key host-microbial relationships in the rhizosphere of plants in response to different abiotic conditions. Finally, the potential functions of the bacterial communities also diverge between the BS and the RSS compartments, particularly in the extreme and harshest belts of the TLT.

CONCLUSIONS

In this study, we identified taxa of bacterial communities that establish species-specific relationships with native plants and showed that over a gradient of changing abiotic conditions, these relationships may also be plant community specific. These findings also reveal that the interactions among members of the soil microbial communities do not support the stress gradient hypothesis. However, through the RSS compartment, each plant community appears to moderate the abiotic stress gradient and increase the efficiency of the soil microbial community, suggesting that positive interactions may be context dependent.

摘要

背景

土壤微生物与植物不断相互作用,这些相互作用通过改变环境来塑造土壤细菌群落的组成。然而,对于不受人类干预的极端环境中微生物与本地植物之间的关系,我们知之甚少。我们结合高通量测序、随机森林分析和共现网络分析,比较了沿阿塔卡马沙漠安第斯山脉山坡上塔拉布雷 - 莱希亚样带(TLT)海拔梯度(2400 - 4500米)分布的三个植被带中21种本地植物物种根际周围土壤(RSS)和相应的大块土壤(BS)中的土壤细菌群落。我们评估了每个植物群落如何影响这个极端自然生态系统中土壤细菌群落的分类群、潜在功能和生态相互作用。我们检验了压力梯度假说的适用性,该假说预测随着压力条件增加,正物种相互作用变得越来越重要,以解释TLT土壤微生物群落成员之间的相互作用。

结果

我们对TLT沿线的RSS和BS区域进行比较,发现了RSS中特定于植物的微生物群落组成的证据,并表明细菌群落在每个植被带中,尤其是在植物根系存在的情况下,会改变它们的生态相互作用,特别是它们的正连接与负连接比率。我们还确定了驱动BS向RSS转变的分类群,这些分类群似乎是植物根际中关键宿主 - 微生物关系的指标,以响应不同的非生物条件。最后,细菌群落的潜在功能在BS和RSS区域之间也存在差异,特别是在TLT的极端和最恶劣地带。

结论

在本研究中,我们确定了与本地植物建立物种特异性关系的细菌群落分类群,并表明在不断变化的非生物条件梯度下,这些关系也可能是特定于植物群落的。这些发现还表明,土壤微生物群落成员之间的相互作用不支持压力梯度假说。然而,通过RSS区域,每个植物群落似乎缓和了非生物压力梯度并提高了土壤微生物群落的效率,这表明正相互作用可能取决于具体环境。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d64/10052861/1bb5875df270/40793_2023_486_Fig1_HTML.jpg

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