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对三联体家庭进行全外显子组测序揭示与1型糖尿病相关的新生突变。

Whole-Exome Sequencing in Family Trios Reveals De Novo Mutations Associated with Type 1 Diabetes Mellitus.

作者信息

Mousa Mira, Albarguthi Sara, Albreiki Mohammed, Farooq Zenab, Sajid Sameeha, El Hajj Chehadeh Sarah, ElBait Gihan Daw, Tay Guan, Deeb Asma Al, Alsafar Habiba

机构信息

Center of Biotechnology, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates.

Department of Biomedical Engineering, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates.

出版信息

Biology (Basel). 2023 Mar 7;12(3):413. doi: 10.3390/biology12030413.

Abstract

Type 1 diabetes mellitus (T1DM) is a chronic autoimmune disease characterized by insulin deficiency and loss of pancreatic islet β-cells. The objective of this study is to identify de novo mutations in 13 trios from singleton families that contribute to the genetic basis of T1DM through the application of whole-exome sequencing (WES). Of the 13 families sampled for this project, 12 had de novo variants, with Family 7 having the highest number (nine) of variants linked to T1DM/autoimmune pathways, whilst Family 4 did not have any variants past the filtering steps. There were 10 variants of 7 genes reportedly associated with T1DM (). There were 20 variants of 13 genes that were linked to endocrine, metabolic, or autoimmune diseases. Our findings demonstrate that trio-based WES is a powerful approach for identifying new candidate genes for the pathogenesis of T1D. Genotyping and functional annotation of the discovered de novo variants in a large cohort is recommended to ascertain their association with disease pathogenesis.

摘要

1型糖尿病(T1DM)是一种慢性自身免疫性疾病,其特征为胰岛素缺乏和胰岛β细胞丧失。本研究的目的是通过应用全外显子组测序(WES),在来自单胎家庭的13个三联体中鉴定新生突变,这些突变有助于T1DM的遗传基础。在为本项目采样的13个家庭中,12个有新生变异,7号家庭与T1DM/自身免疫途径相关的变异数量最多(9个),而4号家庭在过滤步骤后没有任何变异。据报道,有7个基因的10个变异与T1DM相关()。有13个基因的20个变异与内分泌、代谢或自身免疫性疾病相关。我们的研究结果表明,基于三联体的WES是识别T1D发病机制新候选基因的有力方法。建议在大型队列中对发现的新生变异进行基因分型和功能注释,以确定它们与疾病发病机制的关联。

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