Chen Binshen, Xu Kai, Zhang Yiming, Xu Peng, Li Chaoming, Liu Jun, Xu Yawen
Department of Urology, Zhujiang Hospital, Southern Medical University, Guangzhou 510282, China.
Guangzhou Key Laboratory of Inflammatory and Immune Diseases, Zhujiang Hospital, Southern Medical University, Guangzhou 510282, China.
Cancers (Basel). 2023 Mar 22;15(6):1902. doi: 10.3390/cancers15061902.
Long noncoding RNAs (LncRNAs) are very important in the way that docetaxel resistance (DR) happens in prostate cancer (PCa) patients. ImmuneScore and StromalScore were calculated using PCa-related expression data from TCGA and the ESTIMATE algorithm. We finally found the DEGs that were related to the immune system and the stroma of the patients by making profiles of the DEGs in ImmuneScore and StromalScore. The CancerSubtypes algorithm identified prognosis-related PCa subtypes, and the GSVA assessed their pathway activity. A UniCox regression analysis was used to identify a prognosis-related differential gene set. We then used intersection analysis to identify immunological and prognostic (IP)-related genes (IPGs). The coexpression of long noncoding RNAs (lncRNAs) and IPGs was used to identify IP-related lncRNAs (IPLs). Three methods (SVM-RFE, random forest, and LASSO) were used to find genes that overlap in the GEO database. A gene signature was then validated by building an ROC curve. CIBERSORT technology was used to look at the possibility of a link between the gene signature and immune cells. LncRNA-miRNA pairs and miRNA-mRNA pairs from the miRDB and TargetScan databases were used to construct the ERVH48-1-miR-4784-WNT2B ceRNA regulation network. The concentration of docetaxel elevated the expression of ERVH48-1. Overexpression of ERVH48-1 increased PCa-DR cell proliferation, invasion, and migration while inhibiting apoptosis. ERVH48-1 increased the tumorigenicity of PCa-DR cells in nude mice. ERVH48-1, acting as a ceRNA, targeted miR-4784 to increase WNT2B expression. ICG001 therapy increased Wnt/-catenin signaling activity in PCa-DR cells by inhibiting ERVH48-1. Finally, ERVH48-1 increased docetaxel resistance in a WNT2B-dependent manner via the miR-4784/Wnt/-catenin pathway.
长链非编码RNA(LncRNAs)在多西他赛耐药(DR)于前列腺癌(PCa)患者中发生的过程中非常重要。使用来自TCGA的PCa相关表达数据和ESTIMATE算法计算免疫评分(ImmuneScore)和基质评分(StromalScore)。通过绘制免疫评分和基质评分中的差异表达基因(DEGs)图谱,我们最终找到了与患者免疫系统和基质相关的DEGs。CancerSubtypes算法确定了与预后相关的PCa亚型,基因集变异分析(GSVA)评估了它们的通路活性。单因素Cox回归分析用于识别与预后相关的差异基因集。然后,我们使用交集分析来识别免疫与预后(IP)相关基因(IPGs)。长链非编码RNA(lncRNAs)与IPGs的共表达用于识别IP相关lncRNAs(IPLs)。使用三种方法(支持向量机-递归特征消除法(SVM-RFE)、随机森林和套索回归(LASSO))在基因表达综合数据库(GEO)中寻找重叠基因。然后通过构建ROC曲线验证基因特征。使用CIBERSORT技术研究基因特征与免疫细胞之间存在关联的可能性。来自miRDB和TargetScan数据库的LncRNA-miRNA对和miRNA-mRNA对用于构建ERVH48-1-miR-4784-WNT2B竞争性内源RNA(ceRNA)调控网络。多西他赛的浓度升高会提高ERVH48-1的表达。ERVH48-1的过表达增加了PCa-DR细胞的增殖、侵袭和迁移,同时抑制细胞凋亡。ERVH48-1增加了PCa-DR细胞在裸鼠中的致瘤性。ERVH48-1作为ceRNA,靶向miR-4784以增加WNT2B的表达。ICG001治疗通过抑制ERVH48-1增加PCa-DR细胞中的Wnt/β-连环蛋白信号活性。最后,ERVH48-1通过miR-4784/Wnt/β-连环蛋白途径以WNT2B依赖性方式增加多西他赛耐药性。