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基于 DNA 甲基化的年龄预测模型在意大利人群中的法医年龄估计:一项初步研究。

Forensic Age Estimation through a DNA Methylation-Based Age Prediction Model in the Italian Population: A Pilot Study.

机构信息

Section of Legal Medicine, Department of Medicine and Surgery, Santa. Maria Hospital, University of Perugia, 05100 Terni, Italy.

Department of Cardiac, Thoracic, Vascular Sciences and Public Health, University of Padova, 35122 Padova, Italy.

出版信息

Int J Mol Sci. 2023 Mar 11;24(6):5381. doi: 10.3390/ijms24065381.

Abstract

DNA methylation is one of the epigenetic marks which has been studied intensively in recent years for age predicting purposes in the forensic area. In order to integrate age prediction into routine forensic workflow, the purpose of this study was to standardize and optimize a DNA methylation-based protocol tailored to the Italian context. A previously published protocol and age-predictive method was implemented for the analysis of 84 blood samples originating from Central Italy. The study here presented is based on the Single Base Extension method, considering five genes: ELOVL2, FHL2, KLF14, C1orf132, now identified as MIR29B2C, and TRIM59. The precise and specific steps consist of DNA extraction and quantification, bisulfite conversion, amplification of converted DNA, first purification, single base extension, second purification, capillary electrophoresis, and analysis of the results to train and test the tool. The prediction error obtained, expressed as mean absolute deviation, showed a value of 3.12 years in the training set and 3.01 years in the test set. Given that population-based differences in DNA methylation patterns have been previously reported in the literature, it would be useful to further improve the study implementing additional samples representative of the entire Italian population.

摘要

DNA 甲基化是近年来在法医领域中被广泛研究的一种表观遗传标记,用于预测年龄。为了将年龄预测纳入常规法医工作流程,本研究旨在标准化和优化针对意大利情况定制的基于 DNA 甲基化的方案。本研究基于单碱基延伸方法,使用了先前发表的方案和年龄预测方法,对来自意大利中部的 84 个血液样本进行了分析。该研究基于五个基因:ELOVL2、FHL2、KLF14、C1orf132 和现在被确定为 MIR29B2C 的 TRIM59。具体和精确的步骤包括 DNA 提取和定量、亚硫酸氢盐转化、转化 DNA 的扩增、第一次纯化、单碱基延伸、第二次纯化、毛细管电泳以及结果分析,以训练和测试工具。在训练集和测试集中,预测误差表示为平均绝对偏差,分别为 3.12 年和 3.01 年。由于文献中已经报道了基于人群的 DNA 甲基化模式差异,因此进一步改进该研究,实施代表整个意大利人群的更多样本将是有益的。

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