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作为潜在的磷酸丙糖异构酶抑制剂的苯并咪唑衍生物的虚拟筛选及其对……的生物活性

Virtual Screening of Benzimidazole Derivatives as Potential Triose Phosphate Isomerase Inhibitors with Biological Activity against .

作者信息

Vázquez-Jiménez Lenci K, Juárez-Saldivar Alfredo, Chan-Bacab Manuel J, Delgado-Maldonado Timoteo, González-Morales Luis D, Palos Isidro, Ortiz-Pérez Eyra, Lara-Ramírez Edgar E, Ramírez-Moreno Esther, Rivera Gildardo

机构信息

Laboratorio de Biotecnología Farmacéutica, Centro de Biotecnología Genómica, Instituto Politécnico Nacional, Reynosa 88710, Mexico.

Centro de Investigación en Microbiología Ambiental y Biotecnología, Universidad Autónoma de Campeche, Campeche 24039, Mexico.

出版信息

Pharmaceuticals (Basel). 2023 Mar 3;16(3):390. doi: 10.3390/ph16030390.

Abstract

() is a causal agent of cutaneous leishmaniasis (CL), a "", for which the search for new drugs is a priority. Benzimidazole is a scaffold used to develop antiparasitic drugs; therefore, it is interesting molecule against . In this work, a ligand-based virtual screening (LBVS) of the ZINC15 database was performed. Subsequently, molecular docking was used to predict the compounds with potential binding at the dimer interface of triosephosphate isomerase (TIM) of (TIM). Compounds were selected on binding patterns, cost, and commercial availability for in vitro assays against blood promastigotes. The compounds were analyzed by molecular dynamics simulation on TIM and its homologous human TIM. Finally, the physicochemical and pharmacokinetic properties were determined . A total of 175 molecules with docking scores between -10.8 and -9.0 Kcal/mol were obtained. Compound showed the best leishmanicidal activity (IC = 4.04 µM) with a value similar to the reference drug pentamidine (IC = 2.23 µM). Molecular dynamics analysis predicted low affinity for human TIM. Furthermore, the pharmacokinetic and toxicological properties of the compounds were suitable for developing new leishmanicidal agents.

摘要

()是皮肤利什曼病(CL)的病原体,皮肤利什曼病是一种“”,寻找新药是当务之急。苯并咪唑是用于开发抗寄生虫药物的骨架;因此,它是对抗()的有趣分子。在这项工作中,对ZINC15数据库进行了基于配体的虚拟筛选(LBVS)。随后,使用分子对接来预测在()的磷酸丙糖异构酶(TIM)二聚体界面具有潜在结合能力的化合物。根据结合模式、成本和商业可得性选择化合物,用于针对()血前鞭毛体的体外试验。通过对TIM及其同源人类TIM进行分子动力学模拟来分析这些化合物。最后,确定其物理化学和药代动力学性质。共获得175个对接分数在-10.8至-9.0千卡/摩尔之间的分子。化合物()表现出最佳的杀利什曼活性(IC = 4.04 μM),其值与参考药物喷他脒(IC = 2.23 μM)相似。分子动力学分析预测其对人类TIM的亲和力较低。此外,这些化合物的药代动力学和毒理学性质适合开发新的杀利什曼剂。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f1ef/10058926/e8af991a1347/pharmaceuticals-16-00390-g001.jpg

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