Hoang Y, Azaldegui Christopher A, Ghalmi Maria, Biteen Julie S, Vecchiarelli Anthony G
Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109 USA.
Equal contribution.
bioRxiv. 2023 Mar 23:2023.03.22.533878. doi: 10.1101/2023.03.22.533878.
High-resolution imaging of biomolecular condensates in living cells is essential for correlating their properties to those observed through assays. However, such experiments are limited in bacteria due to resolution limitations. Here we present an experimental framework that probes the formation, reversibility, and dynamics of condensate-forming proteins in as a means to determine the nature of biomolecular condensates in bacteria. We demonstrate that condensates form after passing a threshold concentration, maintain a soluble fraction, dissolve upon shifts in temperature and concentration, and exhibit dynamics consistent with internal rearrangement and exchange between condensed and soluble fractions. We also discovered that an established marker for insoluble protein aggregates, IbpA, has different colocalization patterns with bacterial condensates and aggregates, demonstrating its applicability as a reporter to differentiate the two . Overall, this framework provides a generalizable, accessible, and rigorous set of experiments to probe the nature of biomolecular condensates on the sub-micron scale in bacterial cells.
对活细胞中生物分子凝聚物进行高分辨率成像,对于将其特性与通过实验观察到的特性相关联至关重要。然而,由于分辨率限制,此类实验在细菌中受到限制。在此,我们提出了一个实验框架,该框架探究细菌中凝聚物形成蛋白的形成、可逆性和动力学,以此作为确定细菌中生物分子凝聚物性质的一种手段。我们证明,凝聚物在超过阈值浓度后形成,保持一个可溶部分,在温度和浓度变化时溶解,并表现出与凝聚部分和可溶部分之间的内部重排和交换一致的动力学。我们还发现,一种既定的不溶性蛋白质聚集体标记物IbpA与细菌凝聚物和聚集体具有不同的共定位模式,证明了其作为区分两者的报告分子的适用性。总体而言,该框架提供了一套可推广、易操作且严谨的实验,以探究细菌细胞中亚微米尺度上生物分子凝聚物的性质。