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非小细胞肺癌新型预后生物标志物及治疗靶点的鉴定与验证

Identification and validation of novel prognostic biomarkers and therapeutic targets for non-small cell lung cancer.

作者信息

Lai Li-Ting, Ren Yuan-Hui, Huai Ya-Jun, Liu Yu, Liu Ying, Wang Shan-Shan, Mei Jin-Hong

机构信息

Department of Oncology, The First Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, China.

Department of Pathology, The First Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, China.

出版信息

Front Genet. 2023 Mar 16;14:1139994. doi: 10.3389/fgene.2023.1139994. eCollection 2023.

Abstract

Despite the significant survival benefits of anti-PD-1/PD-L1 immunotherapy, non-small cell lung cancer (NSCLC) remains one of the most common tumors and major causes of cancer-related deaths worldwide. Thus, there is an urgent need to identify new therapeutic targets for this refractory disease. In this study, microarray datasets GSE27262, GSE75037, GSE102287, and GSE21933 were integrated by Venn diagram. We performed functional clustering and pathway enrichment analyses using R. Through the STRING database and Cytoscape, we conducted protein-protein interaction (PPI) network analysis and identified the key genes, which were verified by the GEPIA2 and UALCAN portal. Validation of actin-binding protein anillin (ANLN) was performed by quantitative real-time polymerase chain reaction and Western blotting. Additionally, Kaplan-Meier methods were used to compute the survival analyses. In total, 126 differentially expressed genes were identified, which were enriched in mitotic nuclear division, mitotic cell cycle G2/M transition, vasculogenesis, spindle, and peroxisome proliferator-activated receptor signaling pathway. 12 central node genes were identified in the PPI network complex. The survival analysis revealed that high transcriptional levels were associated with inferior survival in NSCLC patients. The clinical implication of ANLN was further explored; its protein expression showed a gradually increasing trend from grade I to III. These Key genes may be involved in the carcinogenesis and progression of NSCLC, which may serve as useful targets for NSCLC diagnosis and treatment.

摘要

尽管抗程序性死亡蛋白1(PD-1)/程序性死亡配体1(PD-L1)免疫疗法具有显著的生存益处,但非小细胞肺癌(NSCLC)仍是全球最常见的肿瘤之一,也是癌症相关死亡的主要原因。因此,迫切需要为这种难治性疾病确定新的治疗靶点。在本研究中,通过维恩图整合了基因芯片数据集GSE27262、GSE75037、GSE102287和GSE21933。我们使用R进行功能聚类和通路富集分析。通过STRING数据库和Cytoscape,我们进行了蛋白质-蛋白质相互作用(PPI)网络分析并确定了关键基因,这些基因通过GEPIA2和UALCAN门户进行了验证。通过定量实时聚合酶链反应和蛋白质免疫印迹法对肌动蛋白结合蛋白膜收缩蛋白(ANLN)进行了验证。此外,使用Kaplan-Meier方法进行生存分析。总共鉴定出126个差异表达基因,这些基因富集于有丝分裂核分裂、有丝分裂细胞周期G2/M期转换、血管生成、纺锤体和过氧化物酶体增殖物激活受体信号通路。在PPI网络复合体中鉴定出12个中心节点基因。生存分析显示,高转录水平与NSCLC患者较差的生存率相关。进一步探讨了ANLN的临床意义;其蛋白表达从I级到III级呈逐渐增加趋势。这些关键基因可能参与NSCLC的发生和发展,可能成为NSCLC诊断和治疗的有用靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e3a/10060803/058c105a803f/fgene-14-1139994-g001.jpg

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