Iwasa Mitsusada, Takeda Shuichi, Narita Akihiro, Maéda Yuichiro, Oda Toshiro
Graduate School of Informatics, Nagoya University, Nagoya, Japan.
Structural Biology Research Center, Graduate School of Science, Nagoya University, Nagoya, Japan.
Front Cell Dev Biol. 2023 Mar 16;11:1105460. doi: 10.3389/fcell.2023.1105460. eCollection 2023.
The dynamic assembly of actin is controlled by the hydrolysis of ATP, bound to the center of the molecule. Upon polymerization, actin undergoes a conformational change from the monomeric G-form to the fibrous F-form, which is associated with the flipping of the side chain of His161 toward ATP. His161 flipping from the gauche-minus to gauche-plus conformation leads to a rearrangement of the active site water molecules, including ATP attacking water (W1), into an orientation capable of hydrolysis. We previously showed that by using a human cardiac muscle α-actin expression system, mutations in the Pro-rich loop residues (A108G and P109A) and in a residue that was hydrogen-bonded to W1 (Q137A) affect the rate of polymerization and ATP hydrolysis. Here, we report the crystal structures of the three mutant actins bound to AMPPNP or ADP-P determined at a resolution of 1.35-1.55Å, which are stabilized in the F-form conformation with the aid of the fragmin F1 domain. In A108G, His161 remained non-flipped despite the global actin conformation adopting the F-form, demonstrating that the side chain of His161 is flipped to avoid a steric clash with the methyl group of A108. Because of the non-flipped His161, W1 was located away from ATP, similar to G-actin, which was accompanied by incomplete hydrolysis. In P109A, the absence of the bulky proline ring allowed His161 to be positioned near the Pro-rich loop, with a minor influence on ATPase activity. In Q137A, two water molecules replaced the side-chain oxygen and nitrogen of Gln137 almost exactly at their positions; consequently, the active site structure, including the W1 position, is essentially conserved. This seemingly contradictory observation to the reported low ATPase activity of the Q137A filament could be attributed to a high fluctuation of the active site water. Together, our results suggest that the elaborate structural design of the active site residues ensures the precise control of the ATPase activity of actin.
肌动蛋白的动态组装受结合于分子中心的ATP水解作用控制。聚合时,肌动蛋白经历从单体G型到纤维状F型的构象变化,这与His161侧链向ATP翻转有关。His161从反式负构象翻转到反式正构象会导致活性位点水分子重排,包括ATP攻击水(W1),形成能够水解的取向。我们之前表明,通过使用人心脏肌肉α-肌动蛋白表达系统,富含脯氨酸环残基(A108G和P109A)以及与W1形成氢键的残基(Q137A)中的突变会影响聚合速率和ATP水解。在此,我们报告了三种与AMPPNP或ADP-P结合的突变肌动蛋白的晶体结构,分辨率为1.35 - 1.55Å,借助凝溶蛋白F1结构域稳定在F型构象。在A108G中,尽管整体肌动蛋白构象采用F型,但His161仍未翻转,表明His161的侧链翻转是为了避免与A108的甲基发生空间冲突。由于His161未翻转,W1远离ATP,类似于G - 肌动蛋白,这伴随着不完全水解。在P109A中,缺少庞大的脯氨酸环使His161能够定位在富含脯氨酸环附近,对ATP酶活性影响较小。在Q137A中,两个水分子几乎精确地取代了Gln137的侧链氧和氮;因此,包括W1位置在内的活性位点结构基本保守。这种与报道的Q137A丝低ATP酶活性看似矛盾的观察结果可能归因于活性位点水的高波动性。总之,我们的结果表明活性位点残基的精细结构设计确保了对肌动蛋白ATP酶活性的精确控制。