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鉴定一种含有 1,8-萘啶的化合物,该化合物具有抑制 p53-MDM2/X 相互作用信号通路的作用:一种计算视角。

Identification of a 1, 8-naphthyridine-containing compound endowed with the inhibition of p53-MDM2/X interaction signaling: a computational perspective.

机构信息

Department of Biotechnology, School of Life Sciences (SLS), Federal University of Technology Akure, P.M.B 704, Akure, Ondo, Nigeria.

Research Center for Modelling and Simulation (RCMS), National University of Science and Technology (NUST), Islamabad, Pakistan.

出版信息

Mol Divers. 2024 Jun;28(3):1109-1127. doi: 10.1007/s11030-023-10637-3. Epub 2023 Apr 7.

Abstract

Various studies have established that molecules specific for MDMX inhibition or optimized for dual inhibition of p53-MDM2/MDMX interaction signaling are more suitable for activating the Tp53 gene in tumor cells. Nevertheless, there are sparse numbers of approved molecules to treat the health consequences brought by the lost p53 functions in tumor cells. Consequently, this study explored the potential of a small molecule ligand containing 1, 8-naphthyridine scaffold to act as a dual inhibitor of p53-MDM2/X interactions using computational methods. The results obtained from quantum mechanical calculations revealed our studied compound entitled CPO is more stable but less reactive compared to standard dual inhibitor RO2443. Like RO2443, CPO also exhibited good non-linear optical properties. The results of molecular docking studies predicted that CPO has a higher potential to inhibit MDM2/MDMX than RO2443. Furthermore, CPO was stable over 50 ns molecular dynamics (MD) simulation in complex with MDM2 and MDMX respectively. On the whole, CPO also exhibited good drug-likeness and pharmacokinetics properties compared to RO2443 and was found with more anti-cancer activity than RO2443 in bioactivity prediction. CPO is anticipated to elevate effectiveness and alleviate drug resistance in cancer therapy. Ultimately, our results provide an insight into the mechanism that underlay the inhibition of p53-MDM2/X interactions by a molecule containing 1, 8-naphthyridine scaffold in its molecular structure.

摘要

各种研究已经证实,针对 MDMX 抑制的分子或针对 p53-MDM2/MDMX 相互作用信号传导的双重抑制进行优化的分子,更适合激活肿瘤细胞中的 Tp53 基因。然而,目前仅有少数批准的分子可用于治疗肿瘤细胞中 p53 功能丧失所带来的健康后果。因此,本研究利用计算方法探索了一种含有 1,8-萘啶骨架的小分子配体作为 p53-MDM2/X 相互作用双重抑制剂的潜力。量子力学计算得到的结果表明,我们研究的化合物 CPO 比标准双重抑制剂 RO2443 更稳定但反应性更低。与 RO2443 一样,CPO 也表现出良好的非线性光学性质。分子对接研究的结果表明,CPO 比 RO2443 更有可能抑制 MDM2/MDMX。此外,CPO 在与 MDM2 和 MDMX 分别形成复合物时,在 50ns 分子动力学 (MD) 模拟中是稳定的。总的来说,CPO 与 RO2443 相比,还表现出更好的类药性和药代动力学特性,并且在生物活性预测中发现其抗癌活性比 RO2443 更强。CPO 有望提高癌症治疗的疗效并减轻耐药性。总之,我们的结果提供了一个深入了解分子结构中含有 1,8-萘啶骨架的分子抑制 p53-MDM2/X 相互作用的机制的见解。

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