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基于某些产品作为SdiA群体感应调节剂的生物勘探。

Bioprospection of Based Products as Quorum Sensing Modulators of SdiA.

作者信息

Dweba Yamkela, Eleojo Aruwa Christiana, Sabiu Saheed

机构信息

Department of Biotechnology and Food Science, Faculty of Applied Sciences, Durban University of Technology, Durban 4000, South Africa.

出版信息

Biochem Res Int. 2025 Jun 9;2025:7191508. doi: 10.1155/bri/7191508. eCollection 2025.

Abstract

is a common pathogen responsible for various gut-related infections, and it utilizes the SdiA-mediated quorum sensing (QS) system to regulate biofilm formation, other virulence factors, and pathogenicity. With rising antibiotic resistance, there is a pressing need to discover alternative QS inhibitors (QSIs) targeting SdiA. This study evaluated 239 phytochemicals from as potential SdiA modulators using in silico techniques. Virtual screening identified four lead compounds (cadala-1(10),3,8-triene, carotenoid K, valencene, and β-sesquiphellandrene), with carotenoid K (-53.71 kcal/mol) exhibiting a higher binding free energy compared to the standard, azithromycin (-52.19 kcal/mol), following dynamics simulation. Notably, the SdiA-carotenoid K complex demonstrated enhanced thermodynamic stability with a root mean square deviation (RMSD) of 2.64 Å. All four leads, except carotenoid K, conformed to the Lipinski rule for selection of candidates that could be administered orally. Quantum chemical feature analyses using DFT/B3LYP showed that carotenoid K had the lowest HOMO-LUMO energy gap, high ionization energy, and electrophilicity index values, indicating its superior reactivity and stability. These properties suggest enhanced interactions with the SdiA active site compared to other investigated compounds. These observations highlight carotenoid K as a promising modulator of SdiA. However, further structural modification and validation through and studies are recommended.

摘要

是引起各种肠道相关感染的常见病原体,它利用SdiA介导的群体感应(QS)系统来调节生物膜形成、其他毒力因子和致病性。随着抗生素耐药性的不断上升,迫切需要发现针对SdiA的替代群体感应抑制剂(QSIs)。本研究使用计算机技术评估了来自[具体来源未提及]的239种植物化学物质作为潜在的SdiA调节剂。虚拟筛选确定了四种先导化合物(卡达拉-1(10),3,8-三烯、类胡萝卜素K、瓦伦烯和β-倍半水芹烯),在动力学模拟后,类胡萝卜素K(-53.71 kcal/mol)与标准品阿奇霉素(-52.19 kcal/mol)相比表现出更高的结合自由能。值得注意的是,SdiA-类胡萝卜素K复合物表现出增强的热力学稳定性,均方根偏差(RMSD)为2.64 Å。除类胡萝卜素K外,所有四种先导化合物均符合可口服给药候选物的Lipinski规则。使用DFT/B3LYP进行的量子化学特征分析表明,类胡萝卜素K具有最低的HOMO-LUMO能隙、高电离能和亲电指数值,表明其具有优异的反应性和稳定性。这些性质表明与其他研究的化合物相比,它与SdiA活性位点的相互作用增强。这些观察结果突出了类胡萝卜素K作为一种有前途的SdiA调节剂。然而,建议通过[具体实验未提及]和[具体实验未提及]研究进行进一步的结构修饰和验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e54/12170066/fcd922cadb30/BRI2025-7191508.001.jpg

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