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单细胞分析整合开发了一个乳酸代谢驱动特征,以改善肺腺癌的预后和免疫治疗。

The integrated single-cell analysis developed a lactate metabolism-driven signature to improve outcomes and immunotherapy in lung adenocarcinoma.

机构信息

Department of Thoracic Surgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.

Department of Breast Surgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.

出版信息

Front Endocrinol (Lausanne). 2023 Mar 22;14:1154410. doi: 10.3389/fendo.2023.1154410. eCollection 2023.

Abstract

BACKGROUND

It has been suggested that lactate metabolism (LM) is crucial for the development of cancer. Using integrated single-cell RNA sequencing (scRNA-seq) analysis, we built predictive models based on LM-related genes (LMRGs) to propose novel targets for the treatment of LUAD patients.

METHODS

The most significant genes for LM were identified through the use of the AUCell algorithm and correlation analysis in conjunction with scRNA-seq analysis. To build risk models with superior predictive performance, cox- and lasso-regression were utilized, and these models were validated on multiple external independent datasets. We then explored the differences in the tumor microenvironment (TME), immunotherapy, mutation landscape, and enriched pathways between different risk groups. Finally, cell experiments were conducted to verify the impact of AHSA1 in LUAD.

RESULTS

A total of 590 genes that regulate LM were identified for subsequent analysis. Using cox- and lasso-regression, we constructed a 5-gene signature that can predict the prognosis of patients with LUAD. Notably, we observed differences in TME, immune cell infiltration levels, immune checkpoint levels, and mutation landscapes between different risk groups, which could have important implications for the clinical treatment of LUAD patients.

CONCLUSION

Based on LMRGs, we constructed a prognostic model that can predict the efficacy of immunotherapy and provide a new direction for treating LUAD.

摘要

背景

已有研究表明,乳酸代谢(LM)对于癌症的发展至关重要。本研究采用整合单细胞 RNA 测序(scRNA-seq)分析,基于与 LM 相关的基因(LMRGs)构建预测模型,为 LUAD 患者的治疗提出新的靶点。

方法

使用 AUCell 算法和相关性分析结合 scRNA-seq 分析,确定与 LM 最显著相关的基因。为了构建具有优越预测性能的风险模型,我们使用了 cox 和lasso 回归,并在多个外部独立数据集上进行了验证。然后,我们探讨了不同风险组之间肿瘤微环境(TME)、免疫治疗、突变景观和富集途径的差异。最后,通过细胞实验验证了 AHSA1 在 LUAD 中的作用。

结果

共鉴定出 590 个调节 LM 的基因进行后续分析。使用 cox 和 lasso 回归,我们构建了一个可以预测 LUAD 患者预后的 5 基因特征。值得注意的是,我们观察到不同风险组之间 TME、免疫细胞浸润水平、免疫检查点水平和突变景观存在差异,这可能对 LUAD 患者的临床治疗具有重要意义。

结论

基于 LMRGs,我们构建了一个可以预测免疫治疗疗效的预后模型,为治疗 LUAD 提供了新的方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b4ee/10073691/bc78abe92822/fendo-14-1154410-g001.jpg

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