蛋白精氨酸甲基转移酶 5(PRMT5)在癌细胞中的突变。
Protein Arginine Methyltransferase 5 (PRMT5) Mutations in Cancer Cells.
机构信息
James Comprehensive Cancer Center, The Ohio State University Columbus, Columbus, OH 43210, USA.
Biology Program, The Ohio State University, Columbus, OH 43210, USA.
出版信息
Int J Mol Sci. 2023 Mar 23;24(7):6042. doi: 10.3390/ijms24076042.
Arginine methylation is a form of posttranslational modification that regulates many cellular functions such as development, DNA damage repair, inflammatory response, splicing, and signal transduction, among others. Protein arginine methyltransferase 5 (PRMT5) is one of nine identified methyltransferases, and it can methylate both histone and non-histone targets. It has pleiotropic functions, including recruitment of repair machinery to a chromosomal DNA double strand break (DSB) and coordinating the interplay between repair and checkpoint activation. Thus, PRMT5 has been actively studied as a cancer treatment target, and small molecule inhibitors of its enzymatic activity have already been developed. In this report, we analyzed all reported PRMT5 mutations appearing in cancer cells using data from the Catalogue of Somatic Mutations in Cancers (COSMIC). Our goal is to classify mutations as either drivers or passengers to understand which ones are likely to promote cellular transformation. Using gold standard artificial intelligence algorithms, we uncovered several key driver mutations in the active site of the enzyme (D306H, L315P, and N318K). In silico protein modeling shows that these mutations may affect the affinity of PRMT5 for S-adenosylmethionine (SAM), which is required as a methyl donor. Electrostatic analysis of the enzyme active site shows that one of these mutations creates a tunnel in the vicinity of the SAM binding site, which may allow interfering molecules to enter the enzyme active site and decrease its activity. We also identified several non-coding mutations that appear to affect PRMT5 splicing. Our analyses provide insights into the role of PRMT5 mutations in cancer cells. Additionally, since PRMT5 single molecule inhibitors have already been developed, this work may uncover future directions in how mutations can affect targeted inhibition.
精氨酸甲基化是一种翻译后修饰形式,可调节多种细胞功能,如发育、DNA 损伤修复、炎症反应、剪接和信号转导等。蛋白质精氨酸甲基转移酶 5(PRMT5)是鉴定出的 9 种甲基转移酶之一,它可以甲基化组蛋白和非组蛋白靶标。它具有多种功能,包括将修复机制募集到染色体 DNA 双链断裂(DSB)处,并协调修复和检查点激活之间的相互作用。因此,PRMT5 已被积极研究作为癌症治疗靶点,并且已经开发出其酶活性的小分子抑制剂。在本报告中,我们使用来自癌症体细胞突变目录(COSMIC)的数据分析了出现在癌细胞中的所有报道的 PRMT5 突变。我们的目标是将突变分类为驱动突变或乘客突变,以了解哪些突变可能促进细胞转化。使用黄金标准人工智能算法,我们在酶的活性部位发现了几个关键的驱动突变(D306H、L315P 和 N318K)。蛋白质计算机模型表明,这些突变可能影响 PRMT5 对 S-腺苷甲硫氨酸(SAM)的亲和力,SAM 是作为甲基供体所必需的。酶活性部位的静电分析表明,这些突变之一在 SAM 结合位点附近产生了一个隧道,这可能允许干扰分子进入酶的活性部位并降低其活性。我们还鉴定了几个似乎影响 PRMT5 剪接的非编码突变。我们的分析提供了对 PRMT5 突变在癌细胞中作用的深入了解。此外,由于已经开发出 PRMT5 单分子抑制剂,这项工作可能会揭示突变如何影响靶向抑制的未来方向。