Institute of Plant and Microbial Biology, Academia Sinica, Taipei 115, Taiwan.
Int J Mol Sci. 2023 Mar 24;24(7):6176. doi: 10.3390/ijms24076176.
Distinct phylogeny and substrate specificities suggest that 12 Arabidopsis Ovarian Tumor domain-containing (OTU) deubiquitinases participate in conserved or plant-specific functions. The null mutant displayed a pleiotropic phenotype, including early flowering, mimicking that of mutants harboring defects in subunits (e.g., ARP6) of the SWR1 complex (SWR1c) involved in histone H2A.Z deposition. Transcriptome and RT-qPCR analyses suggest that downregulated and are responsible for the early flowering of . qChIP analyses revealed a reduction and increase in activating and repressive histone marks, respectively, on and in . Subcellular fractionation, GFP-fusion expression, and MNase treatment of chromatin showed that OTU5 is nucleus-enriched and chromatin-associated. Moreover, OTU5 was found to be associated with and . The OTU5-associated protein complex(es) appears to be distinct from SWR1c, as the molecular weights of OTU5 complex(es) were unaltered in plants. Furthermore, the double mutant exhibited synergistic phenotypes, and H2A.Z levels on were reduced in but not . Our results support the proposition that Arabidopsis OTU5, acting independently of SWR1c, suppresses flowering by activating and through histone modification. Double-mutant analyses also indicate that acts independently of the HUB1-mediated pathway, but it is partially required for -mediated flowering suppression in autonomous pathway mutants and -Col.
12 种拟南芥卵巢肿瘤结构域(OTU)去泛素化酶具有不同的系统发育和底物特异性,提示它们可能参与保守或植物特有的功能。otu5 的 null 突变体表现出多效性表型,包括早期开花,类似于 SWR1 复合物(SWR1c)亚基(如 ARP6)缺陷的突变体。转录组和 RT-qPCR 分析表明,下调的 和 负责 的早期开花。qChIP 分析显示, 在 和 上的激活和抑制组蛋白标记物分别减少和增加。亚细胞分级分离、GFP 融合表达和 MNase 处理染色质表明,OTU5 富含核并与染色质相关。此外,OTU5 被发现与 和 相关。OTU5 相关的蛋白复合物似乎与 SWR1c 不同,因为在 植物中,OTU5 复合物的分子量没有改变。此外, 的双突变体表现出协同表型,并且在 但不在 中, 上的 H2A.Z 水平降低。我们的结果支持这样的假设,即拟南芥 OTU5 独立于 SWR1c 发挥作用,通过组蛋白修饰激活 和 来抑制开花。双突变体分析还表明, 独立于 HUB1 介导的途径发挥作用,但它部分需要在自主途径突变体和 -Col 中 -mediated 开花抑制。