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基于加权基因共表达网络分析筛选并作为膀胱尿路上皮癌相关生物标志物。

Screening and as bladder urothelial carcinoma-related biomarkers based on weighted gene co-expression network analysis.

作者信息

Yang Tenghao, Chi Zepai, Liu Guoyuan, Hong Xuwei, Cao Sizhe, Cheng Kequan, Zhang Yonghai

机构信息

Department of Urology, Shantou Central Hospital, Shantou, China.

出版信息

Front Genet. 2023 Mar 27;14:1107625. doi: 10.3389/fgene.2023.1107625. eCollection 2023.

Abstract

Bladder cancer (BLCA) is one of the most common malignancies in the urinary system with a poor prognosis and high treatment costs. Identifying potential prognostic biomarkers is significant for exploring new therapeutic and predictive targets of BLCA. In this study, we screened differentially expressed genes using the GSE37815 dataset. We then performed a weighted gene co-expression network analysis (WGCNA) to identify the genes correlated with the histologic grade and T stage of BLCA using the GSE32548 dataset. Subsequently, Kaplan Meier survival analysis and Cox regression were used to further identify prognosis-related hub genes using the datasets GSE13507 and TCGA-BLCA. Moreover, we detected the expression of the hub genes in 35 paired samples, including BLCA and paracancerous tissue, from the Shantou Central Hospital by qRT-polymerase chain reaction. This study showed that Anillin (ANLN) and Abnormal spindle-like microcephaly-associated gene (ASPM) were prognostic biomarkers for BLCA. High expression of ANLN and ASPM was associated with poor overall survival.The qRT-PCR results revealed that and genes were upregulated in BLCA, and there was a correlation between the expression of and in cancer tissues and paracancerous tissue. Additionally, the increasing multiples in the gene was obvious in high-grade BLCA. In summary, this preliminary exploration indicated a correlation between and expression. These two genes, serving as the risk factors for BLCA progression, might be promising targets to improve the occurrence and progression of BLCA.

摘要

膀胱癌(BLCA)是泌尿系统中最常见的恶性肿瘤之一,预后较差且治疗成本高。识别潜在的预后生物标志物对于探索BLCA的新治疗和预测靶点具有重要意义。在本研究中,我们使用GSE37815数据集筛选差异表达基因。然后,我们进行了加权基因共表达网络分析(WGCNA),以使用GSE32548数据集识别与BLCA的组织学分级和T分期相关的基因。随后,使用Kaplan Meier生存分析和Cox回归,利用GSE13507和TCGA - BLCA数据集进一步识别与预后相关的枢纽基因。此外,我们通过qRT - 聚合酶链反应检测了来自汕头市中心医院的35对样本(包括BLCA和癌旁组织)中枢纽基因的表达。本研究表明,Anillin(ANLN)和异常纺锤样小头畸形相关基因(ASPM)是BLCA的预后生物标志物。ANLN和ASPM的高表达与总体生存率差相关。qRT - PCR结果显示, 和 基因在BLCA中上调,并且癌组织和癌旁组织中 和 的表达之间存在相关性。此外,在高级别BLCA中 基因的增加倍数明显。总之,这一初步探索表明 和 表达之间存在相关性。这两个基因作为BLCA进展的危险因素,可能是改善BLCA发生和进展的有希望的靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0de1/10083327/b7fe4fc70ccf/fgene-14-1107625-g001.jpg

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