Department of Pharmaceutical Chemistry, JSS College of Pharmacy, JSS Academy of Higher Education and Research, Ooty, Tamilnadu, India.
Amrita Molecular Modeling and Synthesis (AMMAS) Research lab, Amrita Vishwavidyapeetham, Coimbatore, Tamilnadu, India.
J Biomol Struct Dyn. 2023 Dec;41(20):11017-11043. doi: 10.1080/07391102.2023.2199866. Epub 2023 Apr 13.
As breast cancer remains leading cause of cancer death globally, it is essential to develop an affordable breast cancer therapy in underdeveloped countries. Drug repurposing offers potential to address gaps in breast cancer treatment. Molecular networking studies were performed for drug repurposing approach by using heterogeneous data. The PPI networks were built to select the target genes from the EGFR overexpression signaling pathway and its associated family members. The selected genes EGFR, ErbB2, ErbB4 and ErbB3 were allowed to interact with 2637 drugs, leads to PDI network construction of 78, 61, 15 and 19 drugs, respectively. As drugs approved for treating non cancer-related diseases or disorders are clinically safe, effective, and affordable, these drugs were given considerable attention. Calcitriol had shown significant binding affinities with all four receptors than standard neratinib. The RMSD, RMSF, and H-bond analysis of protein-ligand complexes from molecular dynamics simulation (100 ns), confirmed the stable binding of calcitriol with ErbB2 and EGFR receptors. In addition, MMGBSA and MMP BSA also affirmed the docking results. These in-silico results were validated with in-vitro cytotoxicity studies in SK-BR-3 and Vero cells. The IC50 value of calcitriol (43.07 mg/ml) was found to be lower than neratinib (61.50 mg/ml) in SK-BR-3 cells. In Vero cells the IC50 value of calcitriol (431.05 mg/ml) was higher than neratinib (404.95 mg/ml). It demonstrates that calcitriol suggestively downregulated the SK-BR-3 cell viability in a dose-dependent manner. These implications revealed calcitriol has shown better cytotoxicity and decreased the proliferation rate of breast cancer cells than neratinib.Communicated by Ramaswamy H. Sarma.
由于乳腺癌仍然是全球癌症死亡的主要原因,因此在欠发达国家开发一种负担得起的乳腺癌疗法至关重要。药物再利用为解决乳腺癌治疗中的差距提供了潜力。通过使用异质数据进行了药物再利用方法的分子网络研究。构建了 PPI 网络,以从 EGFR 过表达信号通路及其相关家族成员中选择靶基因。允许选择的基因 EGFR、ErbB2、ErbB4 和 ErbB3 与 2637 种药物相互作用,分别导致 PDI 网络构建 78、61、15 和 19 种药物。由于用于治疗非癌症相关疾病或病症的药物在临床上是安全、有效和负担得起的,因此这些药物受到了相当大的关注。与标准的 neratinib 相比,calcitriol 与所有四个受体均显示出显著的结合亲和力。分子动力学模拟(100ns)的蛋白质-配体复合物的 RMSD、RMSF 和 H 键分析,证实了 calcitriol 与 ErbB2 和 EGFR 受体的稳定结合。此外,MMGBSA 和 MMP BSA 也证实了对接结果。这些计算机模拟结果通过 SK-BR-3 和 Vero 细胞的体外细胞毒性研究进行了验证。在 SK-BR-3 细胞中,calcitriol(43.07mg/ml)的 IC50 值低于 neratinib(61.50mg/ml)。在 Vero 细胞中,calcitriol(431.05mg/ml)的 IC50 值高于 neratinib(404.95mg/ml)。这表明 calcitriol 暗示以剂量依赖性方式下调 SK-BR-3 细胞活力。这些意义表明,calcitriol 表现出比 neratinib 更好的细胞毒性并降低了乳腺癌细胞的增殖率。由 Ramaswamy H. Sarma 传达。