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IRE1的四级结构分析

Quaternary structure analysis of IRE1.

作者信息

Bashir Samirul, Pal Debnath, Qadri Ozaira, Banday Mariam, Fazili Khalid

机构信息

University of Kashmir, Srinagar, Jammu and Kashmir, India.

Indian Institute of Science Bangalore, Bengaluru, Karnataka, India.

出版信息

MicroPubl Biol. 2023 Mar 28;2023. doi: 10.17912/micropub.biology.000763. eCollection 2023.

DOI:10.17912/micropub.biology.000763
PMID:37065768
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10091119/
Abstract

IRE1 belongs to a type I transmembrane protein family harboring two functional domains, cytoplasmic domain with kinase and RNAse catalytic activity, and the luminal domain, which is involved in the sensing of unfolded proteins. IRE1 molecule undergoes dimerization in the lumenal domain, which functionally activates the catalytic C-terminal domain. IRE1 activation is directly related to transition between monomeric and dimeric forms. We have deduced two quaternary structures from the published crystal structure of IRE1. One structure with a large stable interface that requires large activation and deactivation energy to active IRE1. The other quaternary structure has low dissociation energy and is more suitable for IRE1 oligomeric transition.

摘要

肌醇需求酶1(IRE1)属于I型跨膜蛋白家族,具有两个功能结构域,即具有激酶和核糖核酸酶催化活性的胞质结构域以及参与未折叠蛋白感知的腔结构域。IRE1分子在腔结构域中发生二聚化,从而在功能上激活催化性的C末端结构域。IRE1的激活与单体形式和二聚体形式之间的转变直接相关。我们根据已发表的IRE1晶体结构推导了两种四级结构。一种结构具有大的稳定界面,激活IRE1需要大量的激活和失活能量。另一种四级结构具有低解离能,更适合IRE1的寡聚体转变。

相似文献

1
Quaternary structure analysis of IRE1.IRE1的四级结构分析
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2
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本文引用的文献

1
The Bcl-2 family protein bid interacts with the ER stress sensor IRE1 to differentially modulate its RNase activity.Bcl-2 家族蛋白 bid 与内质网应激传感器 IRE1 相互作用,从而差异调节其 RNA 酶活性。
FEBS Lett. 2023 Apr;597(7):962-974. doi: 10.1002/1873-3468.14593. Epub 2023 Feb 16.
2
The molecular mechanism and functional diversity of UPR signaling sensor IRE1.IRE1 信号传感器的分子机制和功能多样性。
Life Sci. 2021 Jan 15;265:118740. doi: 10.1016/j.lfs.2020.118740. Epub 2020 Nov 11.
3
Molecular mechanisms of human IRE1 activation through dimerization and ligand binding.
通过二聚化和配体结合实现人类IRE1激活的分子机制。
Oncotarget. 2015 May 30;6(15):13019-35. doi: 10.18632/oncotarget.3864.
4
The unfolded protein response: from stress pathway to homeostatic regulation.未折叠蛋白反应:从应激途径到动态平衡调节。
Science. 2011 Nov 25;334(6059):1081-6. doi: 10.1126/science.1209038.
5
Combining Bayes classification and point group symmetry under Boolean framework for enhanced protein quaternary structure inference.贝叶斯分类与点群对称性在布尔框架下的结合增强蛋白质四级结构预测
Structure. 2011 Mar 9;19(3):304-12. doi: 10.1016/j.str.2011.01.009.
6
The crystal structure of human IRE1 luminal domain reveals a conserved dimerization interface required for activation of the unfolded protein response.人IRE1腔结构域的晶体结构揭示了未折叠蛋白反应激活所需的保守二聚化界面。
Proc Natl Acad Sci U S A. 2006 Sep 26;103(39):14343-8. doi: 10.1073/pnas.0606480103. Epub 2006 Sep 14.
7
Structure and intermolecular interactions of the luminal dimerization domain of human IRE1alpha.人IRE1α腔内二聚化结构域的结构与分子间相互作用
J Biol Chem. 2003 May 16;278(20):17680-7. doi: 10.1074/jbc.M300418200. Epub 2003 Mar 13.