耐盐产类胡萝卜素菌株博戈里亚副球菌BOG6的基因组序列草图及注释
Draft Genome Sequence and Annotation of the Halotolerant Carotenoid-Producing Strain Paracoccus bogoriensis BOG6.
作者信息
Pal Upasana, Bachmann Denise, Blank Lars M, Tiso Till
机构信息
Institute of Applied Microbiology, RWTH Aachen University, Aachen, Germany.
出版信息
Microbiol Resour Announc. 2023 May 17;12(5):e0013323. doi: 10.1128/mra.00133-23. Epub 2023 Apr 17.
Abstract
spp. are Gram-negative, coccoid bacteria, fascinating for their ability to grow in highly diverse environments while producing commercially relevant products. This study describes the draft genome sequence of the halotolerant, alkaliphilic, and thermotolerant carotenoid-producing type strain Paracoccus bogoriensis BOG6.
摘要
嗜盐嗜碱耐热产类胡萝卜素的模式菌株博戈里亚副球菌BOG6是革兰氏阴性球菌，因其能在高度多样的环境中生长并产生具有商业价值的产品而备受关注。本研究描述了该菌株的基因组草图序列。
相似文献
1
Draft Genome Sequence and Annotation of the Halotolerant Carotenoid-Producing Strain Paracoccus bogoriensis BOG6.耐盐产类胡萝卜素菌株博戈里亚副球菌BOG6的基因组序列草图及注释
Microbiol Resour Announc. 2023 May 17;12(5):e0013323. doi: 10.1128/mra.00133-23. Epub 2023 Apr 17.
2
Genomic basis for the unique phenotype of the alkaliphilic purple nonsulfur bacterium Rhodobaca bogoriensis.嗜堿性紫色无硫菌 Rhodobaca bogoriensis 独特表型的基因组基础。
Extremophiles. 2023 Jul 23;27(2):19. doi: 10.1007/s00792-023-01304-4.
3
In vivo creation of plasmid pCRT01 and its use for the construction of carotenoid-producing Paracoccus spp. strains that grow efficiently on industrial wastes.在体内创建质粒 pCRT01 及其在构建能够高效利用工业废物生长的类胡萝卜素生产 Paracoccus spp.菌株中的应用。
Microb Cell Fact. 2020 Jul 13;19(1):141. doi: 10.1186/s12934-020-01396-z.
4
sp. nov., isolated from a black rock cod fish () from the Chilean Antarctic.
Int J Syst Evol Microbiol. 2019 Sep;69(9):2794-2800. doi: 10.1099/ijsem.0.003557.
5
Bacillus bogoriensis sp. nov., a novel alkaliphilic, halotolerant bacterium isolated from a Kenyan soda lake.
Int J Syst Evol Microbiol. 2005 Mar;55(Pt 2):899-902. doi: 10.1099/ijs.0.63318-0.
6
sp. nov., an indole-producing bacterium isolated from the rhizosphere of an orchid, .新种，一种吲哚产生菌，从兰花的根际土壤中分离得到。
Int J Syst Evol Microbiol. 2020 Mar;70(3):1720-1728. doi: 10.1099/ijsem.0.003962. Epub 2020 Jan 8.
7
Whole genome sequence of Paracoccus sp. NFXS7, a carotenoid-producing bacterium isolated from a marine saltern.副球菌属菌株NFXS7的全基因组序列，该菌株是从海洋盐场分离出的一种产类胡萝卜素细菌。
Access Microbiol. 2024 Jul 23;6(7). doi: 10.1099/acmi.0.000862.v2. eCollection 2024.
8
Draft Genome Sequence of Amphibacillus jilinensis Y1(T), a Facultatively Anaerobic, Alkaliphilic and Halotolerant Bacterium.兼性厌氧、嗜碱且耐盐的吉林两栖芽孢杆菌Y1(T)的基因组草图序列
Stand Genomic Sci. 2013 Jul 30;8(3):491-9. doi: 10.4056/sigs.4107829.
9
Whole-genome sequencing of species isolated from the healthy human eye and description of sp. nov.从健康人眼分离株的全基因组测序及 种的描述。
Int J Syst Evol Microbiol. 2023 Apr;73(4). doi: 10.1099/ijsem.0.005838.
10
High carotenoid production by a halotolerant bacterium, Kocuria sp. strain QWT-12 and anticancer activity of its carotenoid.耐盐细菌科氏菌属菌株QWT-12的高类胡萝卜素产量及其类胡萝卜素的抗癌活性
EXCLI J. 2017 Jun 12;16:840-851. doi: 10.17179/excli2017-218. eCollection 2017.
引用本文的文献
1
Taxonomic Diversity and Functional Traits of Soil Bacterial Communities under Radioactive Contamination: A Review.放射性污染下土壤细菌群落的分类多样性和功能特征：综述
Microorganisms. 2024 Apr 3;12(4):733. doi: 10.3390/microorganisms12040733.
本文引用的文献
1
The Illumina Sequencing Protocol and the NovaSeq 6000 System.Illumina 测序方案和 NovaSeq 6000 系统。
Methods Mol Biol. 2021;2242:15-42. doi: 10.1007/978-1-0716-1099-2_2.
2
β-Carotene oxidation products - Function and safety.β-胡萝卜素氧化产物 - 功能与安全性。
Food Chem Toxicol. 2021 Jun;152:112207. doi: 10.1016/j.fct.2021.112207. Epub 2021 Apr 20.
3
Versatile genome assembly evaluation with QUAST-LG.QUAST-LG 进行多功能基因组组装评估。
Bioinformatics. 2018 Jul 1;34(13):i142-i150. doi: 10.1093/bioinformatics/bty266.
4
RefSeq: an update on prokaryotic genome annotation and curation.RefSeq：原核生物基因组注释和管理的最新进展。
Nucleic Acids Res. 2018 Jan 4;46(D1):D851-D860. doi: 10.1093/nar/gkx1068.
5
Revealing the Saline Adaptation Strategies of the Halophilic Bacterium Halomonas beimenensis through High-throughput Omics and Transposon Mutagenesis Approaches.通过高通量组学和转座子诱变方法揭示嗜盐菌 Halomonas beimenensis 的耐盐适应策略。
Sci Rep. 2017 Oct 12;7(1):13037. doi: 10.1038/s41598-017-13450-9.
6
U: A New Metric for Measuring Assembly Output Based on Non-Overlapping, Target-Specific Contigs.U：一种基于非重叠、特定目标重叠群测量装配输出的新指标。
J Comput Biol. 2017 Nov;24(11):1071-1080. doi: 10.1089/cmb.2017.0013. Epub 2017 Apr 18.
7
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
8
Major and trace element geochemistry of Lake Bogoria and Lake Nakuru, Kenya, during extreme draught.肯尼亚博戈里亚湖和纳库鲁湖在极端干旱期间的主要和微量元素地球化学
Chem Erde. 2013 Oct;73(3):275-282. doi: 10.1016/j.chemer.2012.09.001.
9
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
10
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.从嵌合MDA产物中组装单细胞基因组和微型宏基因组。
J Comput Biol. 2013 Oct;20(10):714-37. doi: 10.1089/cmb.2013.0084.
Zotero 插件