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慢性HBV感染患者不同表面基因变异模式扩增及测定的半巢式PCR技术的开发与评估:HBV S基因扩增方法的开发

Development and evaluation of a semi-nested PCR technique for amplification and determination of different surface gene variation patterns in patients with chronic HBV infection: development of an amplification method for HBV S gene.

作者信息

Mokhtari Fedra, Kaboosi Hami, Mohebbi Seyed Reza, Asadzadeh Aghdaei Hamid, Zali Mohammad Reza

机构信息

Department of Microbiology, Ayatollah Amoli Branch, Islamic Azad university, Amol, Iran.

Gastroenterology and Liver Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran.

出版信息

Gastroenterol Hepatol Bed Bench. 2023;16(1):520-523.

PMID:37070108
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10105500/
Abstract

AIM

Development of an amplification method for further investigation of HBV S gene variation patterns.

BACKGROUND

Pre-S/S variants in patients with chronic HBV infection may contribute to the progression of liver damage and Hepatocellular carcinoma (HCC).

METHODS

This study was performed on ten patients with chronic HBV infection. Viral DNA was extracted from patient's plasma, primer design was performed, and a semi-nested PCR method was set up to amplify the pre-S/S region of HBV genome. Subsequently, sequencing was performed to analyze the variants of this region.

RESULTS

In the current study, the semi-nested PCR method was successfully set up, and types of variation in the studied samples were investigated.

CONCLUSION

Pre-S/S variants should be routinely determined in HBV carriers to help identify individuals who may be at a high risk of less favorable liver disease progression. This study showed that the technique could accurately amplify the pre-S/S region, and the product can be successfully used for variation detection by direct sequencing.

摘要

目的

开发一种扩增方法以进一步研究乙肝病毒S基因变异模式。

背景

慢性乙肝病毒感染患者的前S/S变异可能促使肝损伤和肝细胞癌(HCC)进展。

方法

本研究针对10例慢性乙肝病毒感染患者开展。从患者血浆中提取病毒DNA,进行引物设计,并建立半巢式PCR方法以扩增乙肝病毒基因组的前S/S区域。随后进行测序以分析该区域的变异。

结果

在本研究中,成功建立了半巢式PCR方法,并对研究样本的变异类型进行了调查。

结论

应常规检测乙肝病毒携带者的前S/S变异,以帮助识别可能处于肝病进展不利高风险的个体。本研究表明,该技术可准确扩增前S/S区域,其产物可通过直接测序成功用于变异检测。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b52f/10105500/ad4e9757a21d/GHFBB-16-520-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b52f/10105500/93621b36e576/GHFBB-16-520-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b52f/10105500/e3ae1d1c1991/GHFBB-16-520-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b52f/10105500/ad4e9757a21d/GHFBB-16-520-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b52f/10105500/93621b36e576/GHFBB-16-520-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b52f/10105500/e3ae1d1c1991/GHFBB-16-520-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b52f/10105500/ad4e9757a21d/GHFBB-16-520-g003.jpg

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本文引用的文献

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Identification and characterization of a G-quadruplex structure in the pre-core promoter region of hepatitis B virus covalently closed circular DNA.鉴定并描述乙型肝炎病毒共价闭合环状 DNA 前核心启动子区的 G-四链体结构。
J Biol Chem. 2021 Jan-Jun;296:100589. doi: 10.1016/j.jbc.2021.100589. Epub 2021 Mar 24.
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Hepatitis B virus pre-S2 deletion (nucleotide 1 to 54) in plasma predicts recurrence of hepatocellular carcinoma after curative surgical resection.乙型肝炎病毒前 S2 区缺失(核苷酸 1 至 54)在血浆中预测根治性手术后肝细胞癌的复发。
PLoS One. 2020 Nov 25;15(11):e0242748. doi: 10.1371/journal.pone.0242748. eCollection 2020.
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Meta-analysis: Association between hepatitis B virus preS mutation and hepatocellular carcinoma risk.
Meta 分析:乙型肝炎病毒前 S 区突变与肝细胞癌风险的关联。
J Viral Hepat. 2021 Jan;28(1):61-71. doi: 10.1111/jvh.13402. Epub 2020 Sep 24.
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Molecular Characterization of Near Full-Length Genomes of Hepatitis B Virus Isolated from Predominantly HIV Infected Individuals in Botswana.从博茨瓦纳主要感染艾滋病毒的个体中分离出的乙型肝炎病毒近全长基因组的分子特征
Genes (Basel). 2018 Sep 7;9(9):453. doi: 10.3390/genes9090453.
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Hepatitis B virus pre-S/S variants in liver diseases.乙型肝炎病毒前 S/S 变异与肝脏疾病。
World J Gastroenterol. 2018 Apr 14;24(14):1507-1520. doi: 10.3748/wjg.v24.i14.1507.
6
The preS deletion of hepatitis B virus (HBV) is associated with liver fibrosis progression in patients with chronic HBV infection.乙型肝炎病毒 (HBV) 的前 S 缺失与慢性 HBV 感染患者的肝纤维化进展有关。
Hepatol Int. 2018 Mar;12(2):107-117. doi: 10.1007/s12072-018-9858-x. Epub 2018 Apr 12.
7
PreS deletion profiles of hepatitis B virus (HBV) are associated with clinical presentations of chronic HBV infection.乙型肝炎病毒(HBV)的前S区缺失模式与慢性HBV感染的临床表现相关。
J Clin Virol. 2016 Sep;82:27-32. doi: 10.1016/j.jcv.2016.06.018. Epub 2016 Jun 29.
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Genotypes and genetic variability of hepatitis B virus.乙型肝炎病毒的基因型与遗传变异性
Intervirology. 2014;57(3-4):141-50. doi: 10.1159/000360947. Epub 2014 Jul 15.
9
Molecular identification of hepatitis B virus genotypes/subgenotypes: revised classification hurdles and updated resolutions.乙型肝炎病毒基因型/亚基因型的分子鉴定:修订后的分类障碍与最新解决方案
World J Gastroenterol. 2014 Jun 21;20(23):7152-68. doi: 10.3748/wjg.v20.i23.7152.
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Molecular characterization of hepatitis B virus (HBV) strains circulating in the northern coast of the Persian Gulf and its comparison with worldwide distribution of HBV subgenotype D1.对波斯湾北部沿海地区流行的乙型肝炎病毒(HBV)株进行分子特征分析,并与全球 D1 型 HBV 亚基因型分布进行比较。
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