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糖酵解反应中出现的具有离散图灵模式的化学记忆

Chemical Memory with Discrete Turing Patterns Appearing in the Glycolytic Reaction.

作者信息

Gorecki Jerzy, Muzika Frantisek

机构信息

Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland.

出版信息

Biomimetics (Basel). 2023 Apr 13;8(2):154. doi: 10.3390/biomimetics8020154.

Abstract

Memory is an essential element in information processing devices. We investigated a network formed by just three interacting nodes representing continuously stirred tank reactors (CSTRs) in which the glycolytic reaction proceeds as a potential realization of a chemical memory unit. Our study is based on the 2-variable computational model of the reaction. The model parameters were selected such that the system has a stable limit cycle and several distinct, discrete Turing patterns characterized by stationary concentrations at the nodes. In our interpretation, oscillations represent a blank memory unit, and Turing patterns code information. The considered memory can preserve information on one of six different symbols. The time evolution of the nodes was individually controlled by the inflow of ATP. We demonstrate that information can be written with a simple and short perturbation of the inflow. The perturbation applies to only one or two nodes, and it is symbol specific. The memory can be erased with identical inflow perturbation applied to all nodes. The presented idea of pattern-coded memory applies to other reaction networks that allow for discrete Turing patterns. Moreover, it hints at the experimental realization of memory in a simple system with the glycolytic reaction.

摘要

记忆是信息处理设备中的一个基本要素。我们研究了一个仅由三个相互作用的节点构成的网络,这些节点代表连续搅拌釜式反应器(CSTR),其中糖酵解反应作为化学记忆单元的一种潜在实现方式进行。我们的研究基于该反应的双变量计算模型。选择模型参数使得系统具有稳定的极限环以及几个不同的、离散的图灵模式,这些模式以节点处的固定浓度为特征。在我们的解释中,振荡代表一个空白记忆单元,而图灵模式编码信息。所考虑的记忆可以保存关于六个不同符号之一的信息。节点的时间演化由ATP的流入单独控制。我们证明信息可以通过对流入进行简单且短暂的扰动来写入。该扰动仅应用于一个或两个节点,并且是符号特定的。通过对所有节点应用相同的流入扰动可以擦除记忆。所提出的模式编码记忆的概念适用于其他允许离散图灵模式的反应网络。此外,它暗示了在具有糖酵解反应的简单系统中实现记忆的实验可能性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdb7/10123649/d1cd0715e550/biomimetics-08-00154-g001.jpg

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