Research Center for Computational Design of Advanced Functional Materials (CD-FMat), National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Umenzono, Tsukuba, Ibaraki 305-8568, Japan.
Department of Chemistry and Ames Laboratory, Iowa State University, 201 Spedding Hall, Ames, Iowa 50011, USA.
J Chem Phys. 2023 Apr 28;158(16). doi: 10.1063/5.0144917.
Strategies for multiple-level parallelizations of quantum-mechanical calculations are discussed, with an emphasis on using groups of workers for performing parallel tasks. These parallel programming models can be used for a variety ab initio quantum chemistry approaches, including the fragment molecular orbital method and replica-exchange molecular dynamics. Strategies for efficient load balancing on problems of increasing granularity are introduced and discussed. A four-level parallelization is developed based on a multi-level hierarchical grouping, and a high parallel efficiency is achieved on the Theta supercomputer using 131 072 OpenMP threads.
讨论了量子力学计算的多层次并行化策略,重点是使用工作组来执行并行任务。这些并行编程模型可用于各种从头算量子化学方法,包括片段分子轨道法和 replica-exchange 分子动力学。介绍并讨论了针对粒度不断增加的问题的有效负载平衡策略。基于多层次分层分组开发了四级并行化,在 Theta 超级计算机上使用 131072 个 OpenMP 线程实现了很高的并行效率。