Department of Chemistry, Bogazici University, Bebek, 34342 Istanbul, Turkey.
Université de Reims Champagne-Ardenne, 51687 Reims, France.
J Chem Inf Model. 2023 May 22;63(10):2992-3004. doi: 10.1021/acs.jcim.2c01468. Epub 2023 May 1.
As weak acids or bases, in solution, drug molecules are in either their ionized or nonionized states. A high degree of ionization is essential for good water solubility of a drug molecule and is required for drug-receptor interactions, whereas the nonionized form improves a drug's lipophilicity, allowing the ligand to cross the cell membrane. The penetration of a drug ligand through cell membranes is mainly governed by the p of the drug molecule and the membrane environment. In this study, with the aim of predicting the acetonitrile p's (p) of eight drug-like thiazol-2-imine derivatives, we propose a very accurate and computationally affordable protocol by using several quantum mechanical approaches. Benchmark studies were conducted on a set of training molecules, which were selected from the literature with known p and p. Highly well-correlated p values were obtained when the calculations were performed with the isodesmic method at the M062X/6-31G** level of theory in conjunction with SMD solvation model for nitrogen-containing heterocycles. Finally, experimentally unknown p values of eight thiazol-2-imine structures, which were previously synthesized by some of us, are proposed.
在溶液中,作为弱酸或弱碱,药物分子处于离子化或非离子化状态。药物分子具有高程度的离解对于良好的水溶性是必要的,并且对于药物-受体相互作用也是必需的,而非离子化形式则可以提高药物的亲脂性,使配体能够穿过细胞膜。药物配体穿透细胞膜主要由药物分子的 p 和膜环境决定。在这项研究中,为了预测 8 种类似药物的噻唑-2-亚胺衍生物的乙腈 p(p),我们提出了一种非常准确且计算成本低廉的方案,使用了几种量子力学方法。通过使用等电子方法在 M062X/6-31G理论水平上结合含氮杂环的 SMD 溶剂化模型进行计算,在一组从文献中选择的具有已知 p 和 p 的训练分子上进行了基准研究。当使用 M062X/6-31G理论水平上的等电子方法结合 SMD 溶剂化模型进行计算时,得到了高度相关的 p 值。最后,我们提出了之前由我们中的一些人合成的 8 种噻唑-2-亚胺结构的实验未知的 p 值。