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稳定神经降压素受体的 NMR 样品优化和主链分配。

NMR sample optimization and backbone assignment of a stabilized neurotensin receptor.

机构信息

Bavarian NMR Center (BNMRZ) and Structural Membrane Biochemistry, Dept. of Bioscience, TUM School of Natural Sciences, Technical University of Munich, 85748 Garching, Germany.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.

出版信息

J Struct Biol. 2023 Jun;215(2):107970. doi: 10.1016/j.jsb.2023.107970. Epub 2023 May 3.

Abstract

G protein-coupled receptors (GPCRs) are involved in a multitude of cellular signaling cascades and consequently are a prominent target for pharmaceutical drugs. In the past decades, a growing number of high-resolution structures of GPCRs has been solved, providing unprecedented insights into their mode of action. However, knowledge on the dynamical nature of GPCRs is equally important for a better functional understanding, which can be obtained by NMR spectroscopy. Here, we employed a combination of size exclusion chromatography, thermal stability measurements and 2D-NMR experiments for the NMR sample optimization of the stabilized neurotensin receptor type 1 (NTR1) variant HTGH4 bound to the agonist neurotensin. We identified the short-chain lipid di-heptanoyl-glycero-phosphocholine (DHPC) as a promising membrane mimetic for high resolution NMR experiments and obtained a partial NMR backbone resonance assignment. However, internal membrane-incorporated parts of the protein were not visible due to lacking amide proton back-exchange. Nevertheless, NMR and hydrogen deuterium exchange (HDX) mass spectrometry experiments could be used to probe structural changes at the orthosteric ligand binding site in the agonist and antagonist bound states. To enhance amide proton exchange we partially unfolded HTGH4 and observed additional NMR signals in the transmembrane region. However, this procedure led to a higher sample heterogeneity, suggesting that other strategies need to be applied to obtain high-quality NMR spectra of the entire protein. In summary, the herein reported NMR characterization is an essential step toward a more complete resonance assignment of NTR1 and for probing its structural and dynamical features in different functional states.

摘要

G 蛋白偶联受体(GPCRs)参与多种细胞信号级联反应,因此是药物的重要靶点。在过去的几十年中,越来越多的 GPCR 高分辨率结构已被解析,为其作用模式提供了前所未有的见解。然而,GPCR 的动态性质对于更好地理解其功能同样重要,可以通过 NMR 光谱学获得。在这里,我们采用了凝胶过滤色谱、热稳定性测量和 2D-NMR 实验相结合的方法,对与激动剂神经降压素结合的稳定神经降压素受体 1 (NTR1)变体 HTGH4 进行了 NMR 样品优化。我们确定了短链脂质二庚酰基甘油磷酸胆碱(DHPC)作为高分辨率 NMR 实验的有前途的膜模拟物,并获得了部分 NMR 骨架共振归属。然而,由于缺乏酰胺质子回交换,蛋白质内部的膜结合部分不可见。尽管如此,NMR 和氢氘交换(HDX)质谱实验可用于探测激动剂和拮抗剂结合状态下的变构配体结合位点的结构变化。为了增强酰胺质子交换,我们部分展开 HTGH4 并在跨膜区域观察到额外的 NMR 信号。然而,该过程导致样品异质性增加,这表明需要采用其他策略来获得整个蛋白质的高质量 NMR 谱。总之,本文报道的 NMR 特征是完成 NTR1 的完整共振归属以及探测其在不同功能状态下的结构和动态特征的重要步骤。

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