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中心线性坡度分析的最大判定方法评价。

An Evaluation of Maximum Determination Methods for Center Line Slope Analysis.

机构信息

Department of Chemistry and Biochemistry, University of California San Diego, San Diego, California 92093, United States.

出版信息

J Phys Chem B. 2023 May 18;127(19):4268-4276. doi: 10.1021/acs.jpcb.2c07565. Epub 2023 May 9.

DOI:10.1021/acs.jpcb.2c07565
PMID:37159840
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10201534/
Abstract

Ultrafast molecular dynamics are frequently extracted from two-dimensional (2D) spectra via the center line slope (CLS) method. The CLS method depends on the accurate determination of frequencies where the 2D signal is at a maximum, and multiple approaches exist for the determination of that maximum. Various versions of peak fitting for CLS analyses have been utilized; however, the impact of peak fitting on the accuracy and precision of the CLS method has not been reported in detail. Here, we evaluate several versions of CLS analyses using both simulated and experimental 2D spectra. The CLS method was found to be significantly more robust when fits were used to extract the maxima, particularly fitting methods that utilize pairs of opposite-sign peaks. However, we also observed that pairs of opposite-signed peaks required more assumptions than single peaks, which are important to check when interpreting experimental spectra using peak pairs.

摘要

超快分子动力学通常通过中心线斜率(CLS)方法从二维(2D)光谱中提取。CLS 方法取决于准确确定 2D 信号达到最大值的频率,并且存在多种方法来确定该最大值。已经使用了各种版本的峰拟合来进行 CLS 分析;但是,峰拟合对 CLS 方法的准确性和精密度的影响尚未详细报道。在这里,我们使用模拟和实验 2D 光谱评估了几种版本的 CLS 分析。当使用拟合来提取最大值时,CLS 方法发现明显更稳健,特别是使用一对相反符号的峰进行拟合的方法。但是,我们还观察到,与单个峰相比,一对相反符号的峰需要更多的假设,这在使用峰对解释实验光谱时很重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1d1/10201534/c95bff94f88e/jp2c07565_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1d1/10201534/a33a62e2ab37/jp2c07565_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1d1/10201534/a0b6d0b0447d/jp2c07565_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1d1/10201534/0b57cfc1aa3c/jp2c07565_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1d1/10201534/c95bff94f88e/jp2c07565_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1d1/10201534/a33a62e2ab37/jp2c07565_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1d1/10201534/a0b6d0b0447d/jp2c07565_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1d1/10201534/0b57cfc1aa3c/jp2c07565_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d1d1/10201534/c95bff94f88e/jp2c07565_0004.jpg

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本文引用的文献

1
SH-It happens: S-H bonds as intrinsic 2D-IR labels in proteins.SH 键的作用:蛋白质中作为固有 2D-IR 标记的 SH 键。
J Chem Phys. 2022 Oct 7;157(13):135102. doi: 10.1063/5.0107057.
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Interdomain Interactions Modulate the Active Site Dynamics of Human Inducible Nitric Oxide Synthase.域间相互作用调节人诱导型一氧化氮合酶的活性位点动力学。
J Phys Chem B. 2022 Sep 15;126(36):6811-6819. doi: 10.1021/acs.jpcb.2c04091. Epub 2022 Sep 3.
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Water Dynamics and Structure of Highly Concentrated LiCl Solutions Investigated Using Ultrafast Infrared Spectroscopy.
利用超快红外光谱研究高浓度氯化锂溶液的水动力学和结构
J Am Chem Soc. 2022 Mar 9;144(9):4233-4243. doi: 10.1021/jacs.2c00616. Epub 2022 Feb 28.
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Lineshape Distortions in Internal Reflection Two-Dimensional Infrared Spectroscopy: Tuning across the Critical Angle.内反射二维红外光谱中的谱线形状扭曲:在临界角处调谐。
J Phys Chem Lett. 2021 Dec 16;12(49):11843-11849. doi: 10.1021/acs.jpclett.1c03432. Epub 2021 Dec 6.
5
Isolating Polaritonic 2D-IR Transmission Spectra.分离极化激元二维红外透射光谱。
J Phys Chem Lett. 2021 Nov 25;12(46):11406-11414. doi: 10.1021/acs.jpclett.1c03198. Epub 2021 Nov 17.
6
Least-Squares Fitting of Multidimensional Spectra to Kubo Line-Shape Models.多维光谱的最小二乘拟合到库珀线形状模型。
J Phys Chem B. 2021 Nov 25;125(46):12876-12891. doi: 10.1021/acs.jpcb.1c08764. Epub 2021 Nov 16.
7
Probing Ligand Effects on the Ultrafast Dynamics of Copper Complexes via Midinfrared Pump-Probe and 2DIR Spectroscopies.通过中红外泵浦探测和 2DIR 光谱研究配体对铜配合物超快动力学的影响。
J Phys Chem B. 2021 Nov 11;125(44):12228-12241. doi: 10.1021/acs.jpcb.1c06370. Epub 2021 Nov 1.
8
Pump Slice Amplitudes: A Simple and Robust Method for Connecting Two-Dimensional Infrared and Fourier Transform Infrared Spectra.泵浦切片幅度:连接二维红外和傅里叶变换红外光谱的简单而稳健的方法。
J Phys Chem A. 2021 Jul 29;125(29):6498-6504. doi: 10.1021/acs.jpca.1c04558. Epub 2021 Jul 14.
9
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