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VERITAS:在生物发现中利用命名法的力量。

VERITAS: Harnessing the power of nomenclature in biologic discovery.

机构信息

Biologic Therapeutic Discovery, Amgen Research, South San Francisco, CA, USA.

Biologic Therapeutic Discovery, Amgen Research, Thousand Oaks, CA, USA.

出版信息

MAbs. 2023 Jan-Dec;15(1):2207232. doi: 10.1080/19420862.2023.2207232.

DOI:10.1080/19420862.2023.2207232
PMID:37162235
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10173791/
Abstract

We are entering an era in which therapeutic proteins are assembled using building block-like strategies, with no standardized schema to discuss these formats. Existing nomenclatures, like AbML, sacrifice human readability for precision. Therefore, considering even a dozen such formats, in combination with hundreds of possible targets, can create confusion and increase the complexity of drug discovery. To address this challenge, we introduce Verified Taxonomy for Antibodies (VERITAS). This classification and nomenclature scheme is extensible to multispecific therapeutic formats and beyond. VERITAS names are easy to understand while drawing direct connections to the structure of a given format, with or without specific target information, making these names useful to adopt in scientific discourse and as inputs to machine learning algorithms for drug development.

摘要

我们正步入一个使用积木式策略来组装治疗性蛋白的时代,但却没有标准化的方案来讨论这些形式。现有的命名法,如 AbML,为了精确而牺牲了人类的可读性。因此,即使考虑十几个这样的格式,再加上数百个可能的靶点,也可能会造成混淆并增加药物发现的复杂性。为了解决这个挑战,我们引入了抗体验证分类法(VERITAS)。这个分类和命名方案可扩展到多特异性治疗性格式及其他形式。VERITAS 名称易于理解,同时与给定格式的结构直接关联,无论是否有特定的目标信息,这使得这些名称在科学论述中很有用,并且可以作为药物开发的机器学习算法的输入。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3d0/10173791/c23aa8efcc98/KMAB_A_2207232_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3d0/10173791/2341a3bcc207/KMAB_A_2207232_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3d0/10173791/d256ce2f3a14/KMAB_A_2207232_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3d0/10173791/19bd2e700670/KMAB_A_2207232_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3d0/10173791/c23aa8efcc98/KMAB_A_2207232_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3d0/10173791/2341a3bcc207/KMAB_A_2207232_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3d0/10173791/d256ce2f3a14/KMAB_A_2207232_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3d0/10173791/19bd2e700670/KMAB_A_2207232_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3d0/10173791/c23aa8efcc98/KMAB_A_2207232_F0004_OC.jpg

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Antibody markup language (AbML) - a notation language for antibody-based drug formats and software for creating and rendering AbML (abYdraw).抗体标记语言(AbML)- 一种用于抗体药物形式的符号语言,以及用于创建和呈现 AbML(abYdraw)的软件。
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Int J Mol Sci. 2021 May 26;22(11):5632. doi: 10.3390/ijms22115632.
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Bispecific Antibodies: From Research to Clinical Application.双特异性抗体:从研究到临床应用。
Front Immunol. 2021 May 5;12:626616. doi: 10.3389/fimmu.2021.626616. eCollection 2021.
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Bispecific T-cell engagers: Towards understanding variables influencing the in vitro potency and tumor selectivity and their modulation to enhance their efficacy and safety.双特异性 T 细胞衔接器:深入了解影响体外效力和肿瘤选择性的变量及其调节,以提高其疗效和安全性。
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