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基于莰烯亚胺类化合物的抗甲型流感(H1N1)pdm09 病毒的计算机分子模拟研究。

In-silico molecular modelling studies of some camphor imine based compounds as anti-influenza A (H1N1) pdm09 virus agents.

机构信息

Faculty of Physical Sciences, Department of Chemistry, Ahmadu Bello University, Zaria, Kaduna State, Nigeria.

Faculty of Sciences, Department of Pure and Applied Chemistry, Kaduna State University, Zaria, Kaduna State, Nigeria.

出版信息

J Biomol Struct Dyn. 2024 Feb-Mar;42(4):2013-2033. doi: 10.1080/07391102.2023.2209654. Epub 2023 May 11.

Abstract

The advent of influenza A (H1N1) drug-resistant strains led to the search quest for more potent inhibitors of the influenza A virus, especially in this devastating COVID-19 pandemic era. Hence, the present research utilized some molecular modelling strategies to unveil new camphor imine-based compounds as anti-influenza A (H1N1) pdm09 agents. The 2D-QSAR results revealed GFA-MLR (R = 0.9158, Q=0.8475) and GFA-ANN (R = 0.9264, Q=0.9238) models for the anti-influenza A (H1N1) pdm09 activity prediction which have passed the QSAR model acceptability thresholds. The results from the 3D-QSAR studies also revealed CoMFA (R =0.977, Q=0.509) and CoMSIA_S (R =0.976, Q=0.527) models for activity predictions. Based on the notable information derived from the 2D-QSAR, 3D-QSAR, and docking analysis, ten (10) new camphor imine-based compounds (22a-22j) were designed using the most active compound as the template. Furthermore, the high predicted activity and binding scores of compound were further justified by the high reactive sites shown in the electrostatic potential maps and other quantum chemical calculations. The MD simulation of in the active site of the influenza hemagglutinin (HA) receptor confirmed the dynamic stability of the complex. Moreover, the appraisals of drug-likeness and ADMET properties of the proposed compounds showed zero violation of Lipinski's criteria with good pharmacokinetic profiles. Hence, the outcomes in this work recommend further in-depth and in-vitro investigations to validate these theoretical findings.Communicated by Ramaswamy H. Sarma.

摘要

甲型流感(H1N1)耐药菌株的出现促使人们寻找更有效的流感病毒抑制剂,尤其是在 COVID-19 大流行的时代。因此,本研究利用一些分子建模策略,揭示了新的莰酮亚胺类化合物作为抗甲型流感(H1N1)pdm09 的药物。2D-QSAR 结果显示,GFA-MLR(R=0.9158,Q=0.8475)和 GFA-ANN(R=0.9264,Q=0.9238)模型对抗甲型流感(H1N1)pdm09 活性预测具有统计学意义,且通过了 QSAR 模型可接受性标准。3D-QSAR 研究结果也显示 CoMFA(R=0.977,Q=0.509)和 CoMSIA_S(R=0.976,Q=0.527)模型具有活性预测能力。基于 2D-QSAR、3D-QSAR 和对接分析获得的显著信息,以最活跃的化合物 为模板设计了 10 种(10)新的莰酮亚胺类化合物(22a-22j)。此外,静电势图和其他量子化学计算显示化合物 具有较高的反应活性位点,进一步验证了其高预测活性和结合分数。化合物 在流感血凝素(HA)受体活性部位的 MD 模拟证实了复合物的动态稳定性。此外,对所提出化合物的类药性和 ADMET 性质的评估显示,它们没有违反 Lipinski 标准,具有良好的药代动力学特征。因此,本工作的结果建议进一步深入的和体外研究来验证这些理论发现。

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