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通过二维定量构效关系(2D-QSAR)、三维定量构效关系(3D-QSAR)、分子对接和药物代谢及毒性预测(ADMET)对5-苄基-4-噻唑啉酮衍生物作为流感神经氨酸酶抑制剂进行计算机模拟研究。

In-silico modelling studies of 5-benzyl-4-thiazolinone derivatives as influenza neuraminidase inhibitors via 2D-QSAR, 3D-QSAR, molecular docking, and ADMET predictions.

作者信息

Abdullahi Mustapha, Uzairu Adamu, Shallangwa Gideon Adamu, Mamza Paul Andrew, Ibrahim Muhammad Tukur

机构信息

Faculty of Physical Sciences, Department of Chemistry, Ahmadu Bello University, P.M.B. 1044, Zaria, Kaduna State, Nigeria.

Faculty of Sciences, Department of Pure and Applied Chemistry, Kaduna State University, Tafawa Balewa Way, Kaduna, Nigeria.

出版信息

Heliyon. 2022 Aug 8;8(8):e10101. doi: 10.1016/j.heliyon.2022.e10101. eCollection 2022 Aug.

Abstract

Influenza virus disease is one of the most infectious diseases responsible for many human deaths, and the high mutability of the virus causes drug resistance effects in recent times. As such, it became necessary to explore more inhibitors that could avert future influenza pandemics. The present research utilized some in-silico modelling concepts such as 2D-QSAR, 3D-QSAR, molecular docking simulation, and ADMET predictions on some 5-benzyl-4-thiazolinone derivatives as influenza neuraminidase (NA) inhibitors. The 2D-QSAR modelling results revealed GFA-MLR ( =0.8414, Q = 0.7680) and GFA-ANN ( =0.8754, Q = 0.8753) models with the most relevant descriptors (MATS3i, SpMax5_Bhe, minsOH and VE3_D) for predicting the inhibitory activities of the molecules which has passed the global criteria of accepting QSAR models. The results of the 3D-QSAR modelling results showed that CoMFA_ES ( =0.9030, Q = 0.5390) and CoMSIA_EA ( =0.880, Q = 0.547) models are having good predicting ability among other developed models. The molecules were virtually screened via molecular docking simulation with the active site of NA protein receptor (pH1N1) which confirms their resilient potency when compared with zanamivir standard drug. Molecule 11 as the most potent molecule formed more H-bond interactions with the key residues such as TRP178, ARG152, ARG292, ARG371, and TYR406 that triggered the catalytic reactions for NA inhibition. Furthermore, six (6) molecules (9, 10, 11, 17, 22, and 31) with relatively high inhibitory activities and docking scores were identified as the possible leads for in-silico exploration of novel NA inhibitors. The drug-likeness and ADMET predictions of the lead molecules revealed non-violation of Lipinski's rule and good pharmacokinetic profiles respectively, which are important guidelines for rational drug design. Hence, the outcome of this study overlaid a solid foundation for the in-silico design and exploration of novel NA inhibitors with improved potency.

摘要

流感病毒病是导致众多人死亡的最具传染性的疾病之一,并且该病毒的高变异性近来导致了耐药效应。因此,有必要探索更多能够避免未来流感大流行的抑制剂。本研究利用了一些计算机模拟建模概念,如二维定量构效关系(2D-QSAR)、三维定量构效关系(3D-QSAR)、分子对接模拟以及对一些5-苄基-4-噻唑啉酮衍生物作为流感神经氨酸酶(NA)抑制剂的药物代谢动力学(ADMET)预测。二维定量构效关系建模结果显示,广义因子分析-多元线性回归(GFA-MLR)(R² = 0.8414,Q² = 0.7680)和广义因子分析-人工神经网络(GFA-ANN)(R² = 0.8754,Q² = 0.8753)模型具有用于预测分子抑制活性的最相关描述符(MATS3i、SpMax5_Bhe、minsOH和VE3_D),这些模型通过了接受定量构效关系模型的全局标准。三维定量构效关系建模结果表明,比较分子场分析-静电场(CoMFA_ES)(R² = 0.9030,Q² = 0.5390)和比较分子相似性指数分析-静电场(CoMSIA_EA)(R² = 0.880,Q² = 0.547)模型在其他已开发模型中具有良好的预测能力。通过与NA蛋白受体(pH1N1)的活性位点进行分子对接模拟对这些分子进行虚拟筛选,与扎那米韦标准药物相比,证实了它们的强效性。分子11作为最有效的分子与关键残基如TRP178、ARG152、ARG292、ARG371和TYR406形成了更多氢键相互作用,这些残基引发了NA抑制的催化反应。此外,六个(6)具有相对较高抑制活性和对接分数的分子(9、10、11、17、22和31)被确定为新型NA抑制剂计算机模拟探索的可能先导化合物。先导分子的药物相似性和药物代谢动力学预测分别显示未违反Lipinski规则且具有良好的药代动力学特征,这是合理药物设计的重要指导原则。因此,本研究结果为计算机模拟设计和探索具有更高效力的新型NA抑制剂奠定了坚实基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/850b/9396554/9e5a66259bc3/gr1.jpg

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