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针对具有治疗阿尔茨海默病潜力的氧化钒(IV)配合物,参数化和验证了一种新的 AMBER 力场。

Parameterization and validation of a new AMBER force field for an oxovanadium (IV) complex with therapeutic potential implications in Alzheimer's disease.

机构信息

Laboratory of Molecular Modelling, Department of Chemistry, Federal University of Lavras, Lavras, MG, 37200-000, Brazil.

Laboratory of Molecular Modelling, Department of Chemistry, Federal University of Lavras, Lavras, MG, 37200-000, Brazil; Department of Chemistry, Faculty of Science, University of Hradec Králové, Hradec Králové, 500 03, Czech Republic.

出版信息

J Mol Graph Model. 2023 Jul;122:108511. doi: 10.1016/j.jmgm.2023.108511. Epub 2023 May 5.

Abstract

The scarcity of efficient force fields to describe metal complexes may be a problem for new advances in medicinal chemistry. Thus, the development of force fields for these compounds can be valuable for the scientific community, especially when it comes to molecules that show interesting outputs regarding potential treating of diseases. Vanadium complexes, for instance, have shown promising results towards therapeutics of Alzheimer's Disease, most notably the bis(maltolato)oxovanadium (IV). Therefore, the mainly goal of this work is to develop and validate a new set of parameters for this vanadium complex from a minimum energy structure, obtained by DFT calculations, where great results of the new force field are found when confronted with experimental and quantum reference values. Moreover, the new force field showed to be quite effective to describe the molecule of under study whilst GAFF could not describe it effectively. In addition, a case study points out hydrogen bonds in the vanadium complex-PTP1B system.

摘要

描述金属配合物的有效力场的稀缺可能是药物化学新进展的一个问题。因此,这些化合物的力场的发展对于科学界来说是有价值的,特别是对于那些在治疗疾病方面显示出有趣结果的分子。例如,钒配合物在阿尔茨海默病的治疗方面显示出了有希望的结果,尤其是双(麦芽酚)氧钒(IV)。因此,这项工作的主要目标是从通过 DFT 计算得到的最低能量结构中为这种钒配合物开发和验证一套新的参数,在与实验和量子参考值对比时,新力场发现了很好的结果。此外,新的力场在描述所研究的分子时非常有效,而 GAFF 则不能有效地描述它。此外,案例研究指出了钒配合物-PTP1B 系统中的氢键。

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