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基因组单核苷酸多态性揭示中国加拿大一枝黄花(Solidago virgaurea)的多次引入及不同遗传群体

Multiple Introductions and Distinct Genetic Groups of Canada Goldenrod () in China Revealed by Genomic Single-Nucleotide Polymorphisms.

作者信息

Lin Hanyang, Chen Luxi, Li Junmin

机构信息

School of Advanced Study, Taizhou University, Taizhou 318000, China.

Zhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, School of Life Sciences, Taizhou University, Taizhou 318000, China.

出版信息

Plants (Basel). 2023 Apr 22;12(9):1734. doi: 10.3390/plants12091734.

DOI:10.3390/plants12091734
PMID:37176791
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10180931/
Abstract

Despite numerous studies reported in the context of ecology, the introduction history of the infamous invasive plant Canada goldenrod ( L.) remains elusive. In the present study, we explored the sources and the number of introduction events of this species from its native areas into China. Using the genotyping-by-sequencing approach, we identified 34,035 selectively neutral single-nucleotide polymorphism (SNP) markers to infer the evolutionary trajectories of 77 individuals. Both the principal component analysis and the ADMIXTURE analysis revealed two genetic groups that are sympatric to each other in China and suggested the absence of genetic admixtures. The phylogenetic analysis indicated three feasible introduction routes and multiple introduction events of Canada goldenrod into China. Specifically, the one from the USA directly into China, the other from the USA into China through Japan, and the third from the USA into China through Europe. Based on the site frequency spectrum of these identified SNPs, we inferred strong bottleneck events for both genetic groups, and that the multiple introductions did not rescue the decline of genetic diversity. To conclude, multiple introduction events, genetic bottlenecks, and potential human-mediated spread characterize the introduction history of Canada goldenrod in China. The present study harnesses the power of SNP data in deciphering the evolutionary trajectory of invasive plants and paves the way for future studies concerning the invasion mechanism of Canada goldenrod.

摘要

尽管在生态学背景下已有大量研究报道,但臭名昭著的入侵植物加拿大一枝黄花(Solidago virgaurea)的引入历史仍不清楚。在本研究中,我们探究了该物种从其原生地引入中国的来源和引入事件的数量。利用简化基因组测序方法,我们鉴定了34,035个选择性中性单核苷酸多态性(SNP)标记,以推断77个个体的进化轨迹。主成分分析和混合分析均揭示了在中国同域分布的两个遗传群体,且未发现遗传混合现象。系统发育分析表明,加拿大一枝黄花有三条可能的引入路线和多次引入事件进入中国。具体而言,一条是从美国直接引入中国,另一条是从美国经日本引入中国,第三条是从美国经欧洲引入中国。基于这些已鉴定SNP的位点频率谱,我们推断两个遗传群体都经历了强烈的瓶颈事件,且多次引入并未挽救遗传多样性的下降。总之,多次引入事件、遗传瓶颈以及潜在的人类介导传播是加拿大一枝黄花在中国引入历史的特征。本研究利用SNP数据的力量来解读入侵植物的进化轨迹,并为未来关于加拿大一枝黄花入侵机制的研究铺平了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3dd3/10180931/69405a22cf19/plants-12-01734-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3dd3/10180931/d34b87a4cf4a/plants-12-01734-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3dd3/10180931/6756ec2764b9/plants-12-01734-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3dd3/10180931/69405a22cf19/plants-12-01734-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3dd3/10180931/d34b87a4cf4a/plants-12-01734-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3dd3/10180931/6756ec2764b9/plants-12-01734-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3dd3/10180931/69405a22cf19/plants-12-01734-g003.jpg

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