Dev Suma Arun, Unnikrishnan Remya, Prathibha P S, Sijimol K, Sreekumar V B, AzharAli A, Anoop E V, Viswanath Syam
Forest Genetic & Biotechnology Division, Kerala Forest Research Institute, Peechi, Thrissur, Kerala 680653 India.
Cochin University of Science & Technology, Kochi, Kerala India.
3 Biotech. 2023 Jun;13(6):183. doi: 10.1007/s13205-023-03604-0. Epub 2023 May 12.
Extreme difficulties in species identification of illegally sourced wood with conventional tools have accelerated illicit logging activities, leading to the destruction of natural resources in India. In this regard, the study primarily focused on developing a DNA barcode database for 41 commercial timber tree species which are highly vulnerable to adulteration in south India. The developed DNA barcode database was validated using an integrated approach involving wood anatomical features of traded wood samples collected from south India. Traded wood samples were primarily identified using wood anatomical features using IAWA list of microscopic features for hardwood identification. Consortium of Barcode of Life (CBOL) recommended barcode gene regions ( & ) were employed for developing DNA barcode database. Secondly, we employed artificial intelligence (AI) analytical platform, Waikato Environment for Knowledge Analysis (WEKA) for analyzing DNA barcode sequence database which could append precision, speed, and accuracy for the entire identification process. Among the four classification algorithms implemented in the machine learning algorithm (WEKA), best performance was shown by SMO, which could clearly allocate individual samples to their respective sequence database of biological reference materials (BRM) with 100 % accuracy, indicating its efficiency in authenticating the traded timber species. Major advantage of AI is the ability to analyze huge data sets with more precision and also provides a large platform for rapid authentication of species, which subsequently reduces human labor and time.
The online version contains supplementary material available at 10.1007/s13205-023-03604-0.
使用传统工具对非法来源木材进行物种鉴定存在极大困难,这加速了非法采伐活动,导致印度自然资源遭到破坏。在这方面,该研究主要致力于为印度南部41种极易掺假的商业用材树种建立DNA条形码数据库。所建立的DNA条形码数据库采用一种综合方法进行验证,该方法涉及从印度南部收集的交易木材样本的木材解剖特征。交易木材样本主要通过使用国际木材解剖学家协会(IAWA)硬木识别微观特征列表中的木材解剖特征进行鉴定。生命条形码联盟(CBOL)推荐的条形码基因区域(&)被用于建立DNA条形码数据库。其次,我们采用人工智能(AI)分析平台怀卡托知识分析环境(WEKA)来分析DNA条形码序列数据库,这可以提高整个鉴定过程的精度、速度和准确性。在机器学习算法(WEKA)中实施的四种分类算法中,SMO表现出最佳性能,它能够以100%的准确率将单个样本清晰地分配到其各自的生物参考材料(BRM)序列数据库中,表明其在鉴定交易木材物种方面的效率。人工智能的主要优势在于能够更精确地分析海量数据集,还为物种的快速鉴定提供了一个大型平台,从而减少了人力和时间。
在线版本包含可在10.1007/s13205-023-03604-0获取的补充材料。