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后新冠疫情时代使用Jupyter笔记本进行生物信息学的Python编程教学

Teaching Python programming for bioinformatics with Jupyter notebook in the Post-COVID-19 era.

作者信息

Gupta Yash Munnalal, Kirana Satwika Nindya, Homchan Somjit, Tanasarnpaiboon Supatcharee

机构信息

Department of Biology, Faculty of Science, Naresuan University, Phitsanulok, Thailand.

Business Management and Languages, Faculty of Management Science, Silpakorn University, Petchaburi, Thailand.

出版信息

Biochem Mol Biol Educ. 2023 Sep-Oct;51(5):537-539. doi: 10.1002/bmb.21746. Epub 2023 May 18.

Abstract

The COVID-19 pandemic has forced the Bioinformatics course to switch from on-site teaching to remote learning. This shift has prompted a change in teaching methods and laboratory activities. Students need to have a basic understanding of DNA sequences and how to analyze them using custom scripts. To facilitate learning, we have modified the course to use Jupyter Notebook, which offers an alternative approach to writing custom scripts for basic DNA sequence analysis. This approach allows students to acquire the necessary skills while working remotely. It is a versatile and user-friendly platform that can be used to combine explanations, code, and results in a single document. This feature enables students to interact with the code and results, making the learning process more engaging and effective. Jupyter Notebook provides a hybrid approach to learning basic Python scripting and genomics that is effective for remote teaching and learning during the COVID-19 pandemic.

摘要

新冠疫情迫使生物信息学课程从现场教学转向远程学习。这一转变促使教学方法和实验室活动发生了变化。学生需要对DNA序列有基本的了解,以及如何使用自定义脚本对其进行分析。为了便于学习,我们对课程进行了修改,采用了Jupyter Notebook,它为基本DNA序列分析编写自定义脚本提供了另一种方法。这种方法使学生能够在远程学习时获得必要的技能。它是一个多功能且用户友好的平台,可用于在单个文档中结合解释、代码和结果。此功能使学生能够与代码和结果进行交互,使学习过程更具吸引力和有效性。Jupyter Notebook提供了一种学习基本Python脚本和基因组学的混合方法,在新冠疫情期间对远程教学和学习很有效。

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