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韩国特有物种孙炳炎(毛茛科)的叶绿体全基因组序列

Complete chloroplast genome sequence of B.Y. Sun (Ranunculaceae), an endemic species in Korea.

作者信息

Park Joon Moh, Oh Ami, Koo Jachoon

机构信息

Forest Resource Research Division, Jeollabuk-do Forest Environment Research Institute, Jinan, Republic of Korea.

Department of Biology, Chungbuk National University, Cheongju, Republic of Korea.

出版信息

Mitochondrial DNA B Resour. 2023 May 15;8(5):570-574. doi: 10.1080/23802359.2023.2209383. eCollection 2023.

Abstract

The Korean endemic B.Y. Sun, 1993 (Ranunculaceae) is a rare plant distributed in the southwestern part of the Korean Peninsula. The complete chloroplast (cp) genome of was sequenced by next-generation sequencing (NGS) using an Illumina HiSeq X platform. The cp genome of is 160,324 bp in length with 37.9% GC content. It showed a typical quadripartite structure consisting of a pair of inverted repeats (IRs; 28,356 bp), a large single-copy region (LSC; 87,671 bp), and a small single-copy region (SSC; 15,941 bp). The cp genome comprises 130 genes including 85 protein-coding genes (PCGs), 37 tRNA genes, and eight rRNA genes. The molecular phylogenetic analysis indicates that is closely related to , both of which belong to the genus .

摘要

韩国特有种B.Y. Sun, 1993(毛茛科)是一种分布于朝鲜半岛西南部的珍稀植物。利用Illumina HiSeq X平台通过二代测序(NGS)对其完整叶绿体(cp)基因组进行了测序。该物种的cp基因组长度为160,324 bp,GC含量为37.9%。它呈现出典型的四分体结构,由一对反向重复序列(IRs;28,356 bp)、一个大单拷贝区域(LSC;87,671 bp)和一个小单拷贝区域(SSC;15,941 bp)组成。cp基因组包含130个基因,包括85个蛋白质编码基因(PCGs)、37个tRNA基因和8个rRNA基因。分子系统发育分析表明,该物种与同属的另一物种关系密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ffa5/10187104/4cd6475b0167/TMDN_A_2209383_F0001_C.jpg

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